tdreszer: changes by commit

review to branch (2009-11-17 to 2009-12-01) v220

• Thomas doen not have cvs ci permission yet. He changed UW ChIP-seq to ChIP-Seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.666 - lines changed: 167, context: html, text, full: html, text
• Jim requested no enforcement of view range limits
  • src/hg/lib/hui.c 1.250 - lines changed: 2, context: html, text, full: html, text
• Fix bug Rachel found with imageV2 framework, where BLAT sequence track was being forced to the bottom.
  • src/hg/hgTracks/hgTracks.c 1.1608 - lines changed: 7, context: html, text, full: html, text
• Check-in for Thomas. Changed UW ChIP_Seq to UW-ChIP-seq
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.669 - lines changed: 321, context: html, text, full: html, text
• Check-in for Thomas. Added Display Conventions
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.html 1.4 - lines changed: 20, context: html, text, full: html, text
• Minor adjustments to UW settingsByView
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.673 - lines changed: 3, context: html, text, full: html, text
• Loaded several new submissions from HAIB TFSB and corrected a few settings
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.674 - lines changed: 163, context: html, text, full: html, text
• Changed Stefan Graf's affiliation by Terry Furey's request
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.25 - lines changed: 7, context: html, text, full: html, text
• Checkin for Thomas. Notes for UwChIPseq release1, because there are too many files to be listed in the pushQ.
  • src/hg/makeDb/doc/encodeDccHg18/uwChIPseq.release1.notes.txt 1.1 - lines changed: 881, context: html, text, full: html, text
• Minor fix of a referenece to Yale which should have been HudsonAlpha
  • src/hg/makeDb/doc/encodeDccHg18/uwChIPseq.release1.notes.txt 1.2 - lines changed: 2, context: html, text, full: html, text
• Fix for bug Angie found which sets position to 1bp on hgc click
  • src/hg/js/hgTracks.js 1.46 - lines changed: 2, context: html, text, full: html, text
• Added dragStartIndex to be returned by onDrag() callback.
  • src/hg/js/jquery.tablednd.js 1.2 - lines changed: 9, context: html, text, full: html, text
• Added support for calling warnBox insteadf of alert. Now a list of messages can be created, just as from C.
  • src/hg/js/utils.js 1.26 - lines changed: 11, context: html, text, full: html, text
• Tiny bit more protection for findWordByDilimiter()
  • src/lib/common.c 1.139 - lines changed: 3, context: html, text, full: html, text
• Ann noticed missing colors on Open Chromatin tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.684 - lines changed: 24, context: html, text, full: html, text
• Fixed inconsistency in Barski settings caught by Jim
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.429 - lines changed: 2, context: html, text, full: html, text
• Added missing color for Open Chromatin H1-hESC
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.688 - lines changed: 15, context: html, text, full: html, text
• Added BCL11A, BCL3 and BHLHE40 for Myers
  • src/hg/encode/encodeValidate/config/cv.ra 1.144 - lines changed: 33, context: html, text, full: html, text
• Added 5 more antibodies for Myers
  • src/hg/encode/encodeValidate/config/cv.ra 1.145 - lines changed: 55, context: html, text, full: html, text
• Added 2 for Yale and Thomas corrected a DGF setting
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.692 - lines changed: 104, context: html, text, full: html, text
• Added a couple of tagAlign files missing from the versioned files lists
  • src/hg/makeDb/doc/encodeDccHg18/broadChipSeq.notes.txt 1.7 - lines changed: 4, context: html, text, full: html, text