tdreszer: changes by file

branch to review (2009-11-10 to 2009-11-17) v220

• src/hg/encode/DAFs/YDHRnaSeq.daf
  • 1.2 lines changed: 2, context: html, text, full: html, text
    Minor change to validationSettings
• src/hg/encode/DAFs/YDHRnaSeqTreatment.daf
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Minor change to validationSettings
• src/hg/encode/validateFiles/validateFiles.c
  • 1.29 lines changed: 9, context: html, text, full: html, text
    validateFiles.c
• src/hg/hgTracks/chromGraphTrack.c
  • 1.19 lines changed: 4, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/config.c
  • 1.86 lines changed: 5, context: html, text, full: html, text
    Bob does not want no double negatives so I disabled the disable and instead enabled 'Enable advanced javascript features'
  • 1.85 lines changed: 7, context: html, text, full: html, text
    Changed 'Enable drag-zoom' to 'Disable advanced javascript features' in preparation for imageV2
• src/hg/hgTracks/expRatioTracks.c
  • 1.46 lines changed: 8, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/hgTracks.c
  • 1.1607 lines changed: 50, context: html, text, full: html, text
    Changes to fix no leftLabel bug and changes to support separate button slice (needed for subtracks with separate imgTracks)
  • 1.1606 lines changed: 3, context: html, text, full: html, text
    Changed 'Enable drag-zoom' to 'Disable advanced javascript features' in preparation for imageV2
  • 1.1605 lines changed: 65, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/hgTracks.h
  • 1.190 lines changed: 1, context: html, text, full: html, text
    Changed 'Enable drag-zoom' to 'Disable advanced javascript features' in preparation for imageV2
• src/hg/hgTracks/imageV2.c
  • 1.14 lines changed: 1, context: html, text, full: html, text
    Background color of image should only be red for debugging
  • 1.13 lines changed: 20, context: html, text, full: html, text
    Changes to fix no leftLabel bug and changes to support separate button slice (needed for subtracks with separate imgTracks)
  • 1.12 lines changed: 60, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/imageV2.h
  • 1.10 lines changed: 10, context: html, text, full: html, text
    Changes to fix no leftLabel bug and changes to support separate button slice (needed for subtracks with separate imgTracks)
  • 1.9 lines changed: 1, context: html, text, full: html, text
    FINALLY, checkin imageV2 framework without features.
  • 1.8 lines changed: 29, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/simpleTracks.c
  • 1.111 lines changed: 33, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/hgTracks/variation.c
  • 1.145 lines changed: 8, context: html, text, full: html, text
    Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
• src/hg/js/hgTracks.js
  • 1.45 lines changed: 19, context: html, text, full: html, text
    Change to support buttonSlice (code isn't even used without dragScroll which is disabled)
• src/hg/js/hui.js
  • 1.43 lines changed: 104, context: html, text, full: html, text
    Changes to allow the 5th dimension
• src/hg/js/utils.js
  • 1.25 lines changed: 20, context: html, text, full: html, text
    Added some obvious array functions
• src/hg/lib/hui.c
  • 1.248 lines changed: 13, context: html, text, full: html, text
    Fix uninitialized variables, which hit on matrix X no Y
  • 1.247 lines changed: 227, context: html, text, full: html, text
    Changes to allow the 5th dimension
• src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt
  • 1.9 lines changed: 39, context: html, text, full: html, text
    Old... Broad into QA for release2
• src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt
  • 1.10 lines changed: 448, context: html, text, full: html, text
    Finish with Base overloap and getting release2 into QA
• src/hg/makeDb/doc/encodeDccHg18/gencode.txt
  • 1.4 lines changed: 456, context: html, text, full: html, text
    Loaded version v3c
• src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt
  • 1.3 lines changed: 40, context: html, text, full: html, text
    Old stuff needing to be checked in
• src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt
  • 1.11 lines changed: 12, context: html, text, full: html, text
    Dribbling in
• src/hg/makeDb/trackDb/README
  • 1.90 lines changed: 19, context: html, text, full: html, text
    Added instructions for the 'ABC' dimensions
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.645 lines changed: 18, context: html, text, full: html, text
    Finish (I hope) Base Overlap updates from Open Chromatin release 2