tdreszer: changes by commit

branch to review (2009-11-10 to 2009-11-17) v220

• validateFiles.c
  • src/hg/encode/validateFiles/validateFiles.c 1.29 - lines changed: 9, context: html, text, full: html, text
• Finish (I hope) Base Overlap updates from Open Chromatin release 2
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.645 - lines changed: 18, context: html, text, full: html, text
• Cleanup before checkin of imageV2 framework without features. Also made track toggle work better for composites, but only in imageV2
  • src/hg/hgTracks/chromGraphTrack.c 1.19 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/expRatioTracks.c 1.46 - lines changed: 8, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1605 - lines changed: 65, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.12 - lines changed: 60, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h 1.8 - lines changed: 29, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.111 - lines changed: 33, context: html, text, full: html, text
  • src/hg/hgTracks/variation.c 1.145 - lines changed: 8, context: html, text, full: html, text
• Changed 'Enable drag-zoom' to 'Disable advanced javascript features' in preparation for imageV2
  • src/hg/hgTracks/config.c 1.85 - lines changed: 7, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1606 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h 1.190 - lines changed: 1, context: html, text, full: html, text
• FINALLY, checkin imageV2 framework without features.
  • src/hg/hgTracks/imageV2.h 1.9 - lines changed: 1, context: html, text, full: html, text
• Added some obvious array functions
  • src/hg/js/utils.js 1.25 - lines changed: 20, context: html, text, full: html, text
• Changes to allow the 5th dimension
  • src/hg/js/hui.js 1.43 - lines changed: 104, context: html, text, full: html, text
  • src/hg/lib/hui.c 1.247 - lines changed: 227, context: html, text, full: html, text
• Loaded version v3c
  • src/hg/makeDb/doc/encodeDccHg18/gencode.txt 1.4 - lines changed: 456, context: html, text, full: html, text
• Finish with Base overloap and getting release2 into QA
  • src/hg/makeDb/doc/encodeDccHg18/dukeUtaUncCrawford.txt 1.10 - lines changed: 448, context: html, text, full: html, text
• Old stuff needing to be checked in
  • src/hg/makeDb/doc/encodeDccHg18/haibChipSeq.txt 1.3 - lines changed: 40, context: html, text, full: html, text
• Old... Broad into QA for release2
  • src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt 1.9 - lines changed: 39, context: html, text, full: html, text
• Dribbling in
  • src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt 1.11 - lines changed: 12, context: html, text, full: html, text
• Minor change to validationSettings
  • src/hg/encode/DAFs/YDHRnaSeq.daf 1.2 - lines changed: 2, context: html, text, full: html, text
  • src/hg/encode/DAFs/YDHRnaSeqTreatment.daf 1.2 - lines changed: 1, context: html, text, full: html, text
• Added instructions for the 'ABC' dimensions
  • src/hg/makeDb/trackDb/README 1.90 - lines changed: 19, context: html, text, full: html, text
• Fix uninitialized variables, which hit on matrix X no Y
  • src/hg/lib/hui.c 1.248 - lines changed: 13, context: html, text, full: html, text
• Bob does not want no double negatives so I disabled the disable and instead enabled 'Enable advanced javascript features'
  • src/hg/hgTracks/config.c 1.86 - lines changed: 5, context: html, text, full: html, text
• Change to support buttonSlice (code isn't even used without dragScroll which is disabled)
  • src/hg/js/hgTracks.js 1.45 - lines changed: 19, context: html, text, full: html, text
• Changes to fix no leftLabel bug and changes to support separate button slice (needed for subtracks with separate imgTracks)
  • src/hg/hgTracks/hgTracks.c 1.1607 - lines changed: 50, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.c 1.13 - lines changed: 20, context: html, text, full: html, text
  • src/hg/hgTracks/imageV2.h 1.10 - lines changed: 10, context: html, text, full: html, text
• Background color of image should only be red for debugging
  • src/hg/hgTracks/imageV2.c 1.14 - lines changed: 1, context: html, text, full: html, text