File Changes for markd

v241_base to v242_preview (2010-09-28 to 2010-10-05) v242

• src/hg/blastToPsl/blastToPsl.c
  • lines changed 5, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/blastXmlToPsl.c
  • lines changed 6, context: html, text, full: html, text
    special case handling of target ids for psiBlast
  • lines changed 130, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/pslBuild.c
  • lines changed 31, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/pslBuild.h
  • lines changed 10, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/mrna1Test.bscores
  • lines changed 13, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/prot1Test.bscores
  • lines changed 73, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/prot2Test.bscores
  • lines changed 4, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/qtName1Test.psl
  • lines changed 4, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/qtName2Test.psl
  • lines changed 4, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/blastToPsl/tests/expected/sp1PsiBlastTest.psl
  • lines changed 4, context: html, text, full: html, text
    special case handling of target ids for psiBlast
• src/hg/blastToPsl/tests/input/sp1.psiBlast.xml
  • lines changed 258, context: html, text, full: html, text
    special case handling of target ids for psiBlast
• src/hg/blastToPsl/tests/makefile
  • lines changed 9, context: html, text, full: html, text
    special case handling of target ids for psiBlast
  • lines changed 13, context: html, text, full: html, text
    added options to specify how to obtained qName and tName. Output query and target defs in score file
• src/hg/das/das.c
  • lines changed 68, context: html, text, full: html, text
    added headers to allow access to das from javascript browsers, fixed a code crash
• src/hg/das/tests/dasXmlValidate
  • lines changed 0, context: html, text, full: html, text
    added headers to allow access to das from javascript browsers, fixed a code crash
  • lines changed 62, context: html, text, full: html, text
    added headers to allow access to das from javascript browsers, fixed a code crash
• src/hg/das/tests/makefile
  • lines changed 7, context: html, text, full: html, text
    added headers to allow access to das from javascript browsers, fixed a code crash