File Changes for braney

v247_preview2 to v247_base (2011-02-08 to 2011-02-14) v247

• src/hg/hgTables/bam.c
  • lines changed 24, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/filterFields.c
  • lines changed 3, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/hgTables.h
  • lines changed 3, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/identifiers.c
  • lines changed 2, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/intersect.c
  • lines changed 2, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/mainPage.c
  • lines changed 9, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTables/wiggle.c
  • lines changed 4, context: html, text, full: html, text
    add intersections, identifier filtering, and file length limits to BAM output
• src/hg/hgTracks/snakeTrack.c
  • lines changed 4, context: html, text, full: html, text
    works now.
  • lines changed 87, context: html, text, full: html, text
    clean up comments
  • lines changed 13, context: html, text, full: html, text
    fix a bug where blocks were being dropped
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v247
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    Sydh nucleosome
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 1, context: html, text, full: html, text
    fix replicate number
  • lines changed 6, context: html, text, full: html, text
    oops... a few more changes to the replicate numbers
  • lines changed 1301, context: html, text, full: html, text
    fix up the MAGIC!
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra
  • lines changed 945, context: html, text, full: html, text
    Sydh nucleosome
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 92, context: html, text, full: html, text
    snakes for the MHC region
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 3, context: html, text, full: html, text
    Sydh nucleosome
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra
  • lines changed 22, context: html, text, full: html, text
    use docId names
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra
  • lines changed 95, context: html, text, full: html, text
    stop using type bedLogR. We can get most of what we want through the extraFields trackDb setting
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra
  • lines changed 39, context: html, text, full: html, text
    oops.. why do I always forget something?
  • lines changed 1, context: html, text, full: html, text
    add release alpha tag
  • lines changed 1, context: html, text, full: html, text
    set some rational view limits
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v247 final build