Commits for braney

v247_preview2 to v247_base (2011-02-08 to 2011-02-14) v247

• stop using type bedLogR. We can get most of what we want through the extraFields trackDb setting
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.ra - lines changed 95, context: html, text, full: html, text
• fix replicate number
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 1, context: html, text, full: html, text
• oops... a few more changes to the replicate numbers
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 6, context: html, text, full: html, text
• Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
• use docId names
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra - lines changed 22, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• Sydh nucleosome
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhNsome.ra - lines changed 945, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• oops.. why do I always forget something?
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 39, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• add release alpha tag
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
• set some rational view limits
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• fix up the MAGIC!
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 1301, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• works now.
  • src/hg/hgTracks/snakeTrack.c - lines changed 4, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• add intersections, identifier filtering, and file length limits to BAM output
  • src/hg/hgTables/bam.c - lines changed 24, context: html, text, full: html, text
  • src/hg/hgTables/filterFields.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTables/hgTables.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTables/identifiers.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTables/intersect.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTables/mainPage.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTables/wiggle.c - lines changed 4, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• clean up comments
  • src/hg/hgTracks/snakeTrack.c - lines changed 87, context: html, text, full: html, text
• snakes for the MHC region
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 92, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• fix a bug where blocks were being dropped
  • src/hg/hgTracks/snakeTrack.c - lines changed 13, context: html, text, full: html, text
• v247 final build
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of hgwdev:/data/git/kent
• New version number v247
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text