Commits for kent
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v250_preview to v250_preview2 (2011-04-05 to 2011-04-12) v250
- Smoothing out the handling of the track->children pointer and track->subtracks pointer so that it works the same in hgTrackUi as elsewhere. The children pointers are set after pruning the track list for ones where the data table is not available.
- src/hg/hgFileUi/hgFileUi.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 50, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 7, context: html, text, full: html, text
- src/hg/oneShot/freen/freen.c - lines changed 258, context: html, text, full: html, text
- Adding several command line options to control tunable variables.
- src/hg/regulate/companion/regCompanionPickEnhancers/regCompanionPickEnhancers.c - lines changed 47, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionPickEnhancers/test.csh - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- Adding several command line options to control tunable variables.
- src/hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/regCompanionCorrelateEnhancerAndExpression.c - lines changed 15, context: html, text, full: html, text
- Removing some debugging.
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 5, context: html, text, full: html, text
- Adding firstCodingSplice as a region you can get with bedGeneParts.
- src/utils/bedGeneParts/bedGeneParts.c - lines changed 47, context: html, text, full: html, text
- src/utils/bedGeneParts/firstCodingSplice.expected - lines changed 6, context: html, text, full: html, text
- src/utils/bedGeneParts/makefile - lines changed 2, context: html, text, full: html, text
- Some analysis code for chia-pet. Makes a big table other things can crawl through at their leisure.
- src/hg/regulate/companion/regCompanionChia/makefile - lines changed 18, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionChia/regCompanionChia.c - lines changed 331, context: html, text, full: html, text
- Adding simple box filter around peaks method.
- src/hg/regulate/companion/regCompanionHistoneBox/makefile - lines changed 18, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionHistoneBox/regCompanionHistoneBox.c - lines changed 168, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionPickGeneSet/makefile - lines changed 18, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionPickGeneSet/regCompanionPickGeneSet.c - lines changed 189, context: html, text, full: html, text
- Testing some correlation ideas with freen.
- src/hg/oneShot/freen/freen.c - lines changed 44, context: html, text, full: html, text
- Describing output better mostly.
- src/hg/regulate/companion/regCompanionChia/regCompanionChia.c - lines changed 26, context: html, text, full: html, text
- Adding permuteTest option.
- src/hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/regCompanionCorrelateEnhancerAndExpression.c - lines changed 68, context: html, text, full: html, text
- Moving routine to find next on list with a different chromosome to library since it keeps coming up.
- src/hg/regulate/companion/regCompanionCorrelateEnhancerAndExpression/test.csh - lines changed 1, context: html, text, full: html, text
- src/hg/regulate/companion/regCompanionGraphVsFixedPoints/regCompanionGraphVsFixedPoints.c - lines changed 12, context: html, text, full: html, text
- Adding exons as a type of bedGenePart output.
- src/utils/bedGeneParts/bedGeneParts.c - lines changed 66, context: html, text, full: html, text
- Adding -aveScore optoin.
- src/hg/regulate/regCluster/regCluster.c - lines changed 9, context: html, text, full: html, text
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