File Changes for braney

v252_preview to v252_preview2 (2011-05-17 to 2011-05-31) v252

• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 1, context: html, text, full: html, text
    allow the dash character in csqual strings.
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 220, context: html, text, full: html, text
    move hub connection stuff into hg/lib so hgTracks can add hubs on its own
  • lines changed 3, context: html, text, full: html, text
    add some printf's for hub clear
• src/hg/hgTracks/hgTracks.c
  • lines changed 22, context: html, text, full: html, text
    move hub connection stuff into hg/lib so hgTracks can add hubs on its own
• src/hg/hgTracks/snakeTrack.c
  • lines changed 380, context: html, text, full: html, text
    now have pack and full modes. Coloring by strand is default. Needs a more useful way of drawing the lines that connect the blocks in pack mode. Maybe snake mode should be option in detail page? That way we can overload the track controls.
  • lines changed 45, context: html, text, full: html, text
    still under development.....
• src/hg/inc/hubConnect.h
  • lines changed 13, context: html, text, full: html, text
    move hub connection stuff into hg/lib so hgTracks can add hubs on its own
• src/hg/lib/hubConnect.c
  • lines changed 208, context: html, text, full: html, text
    move hub connection stuff into hg/lib so hgTracks can add hubs on its own
• src/hg/lib/trackHub.c
  • lines changed 3, context: html, text, full: html, text
    fix problem with having "show" after "superTrack on" in the trackDb.txt file (reported by Ting's group)
• src/hg/makeDb/doc/anoCar2.txt
  • lines changed 56, context: html, text, full: html, text
    hgPal downloads for 7way
• src/hg/makeDb/doc/calJac3.txt
  • lines changed 144, context: html, text, full: html, text
    added hgPal downloads for 13way
• src/hg/makeDb/doc/panTro3.txt
  • lines changed 101, context: html, text, full: html, text
    hgPal downloads for 12way
• src/hg/makeDb/hgCgiData/makefile
  • lines changed 1, context: html, text, full: html, text
    remove install hgCgiData directory for user builds
  • lines changed 2, context: html, text, full: html, text
    oops... didn't do this right the first time. #4039
• src/hg/utils/hubPublicCheck/hubPublicCheck.c
  • lines changed 85, context: html, text, full: html, text
    the beginnings of a program to validate hubPublic against the labels that are in the hub's themselves.
  • lines changed 64, context: html, text, full: html, text
    adding hubCheck and hubPublicCheck to the build. hubPublicCheck is called from my crontab now to check that the hubPublic table is consistent with what's in the hubPublic table
• src/hg/utils/hubPublicCheck/makefile
  • lines changed 19, context: html, text, full: html, text
    the beginnings of a program to validate hubPublic against the labels that are in the hub's themselves.
• src/hg/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    adding hubCheck and hubPublicCheck to the build. hubPublicCheck is called from my crontab now to check that the hubPublic table is consistent with what's in the hubPublic table
• src/inc/obscure.h
  • lines changed 2, context: html, text, full: html, text
    add a routine to find a name in a comma separate list (Jim wrote this but I'm moving it)
• src/lib/obscure.c
  • lines changed 25, context: html, text, full: html, text
    add a routine to find a name in a comma separate list (Jim wrote this but I'm moving it)
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    add bigWigAverageOverBed to userApps
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v252 preview2
  • lines changed 1, context: html, text, full: html, text
    v252 preview2