Commits for braney

v252_preview to v252_preview2 (2011-05-17 to 2011-05-31) v252

• hgPal downloads for 7way
  • src/hg/makeDb/doc/anoCar2.txt - lines changed 56, context: html, text, full: html, text
• hgPal downloads for 12way
  • src/hg/makeDb/doc/panTro3.txt - lines changed 101, context: html, text, full: html, text
• allow the dash character in csqual strings.
  • src/hg/encode/validateFiles/validateFiles.c - lines changed 1, context: html, text, full: html, text
• add a routine to find a name in a comma separate list (Jim wrote this but I'm moving it)
  • src/inc/obscure.h - lines changed 2, context: html, text, full: html, text
  • src/lib/obscure.c - lines changed 25, context: html, text, full: html, text
• move hub connection stuff into hg/lib so hgTracks can add hubs on its own
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 220, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c - lines changed 22, context: html, text, full: html, text
  • src/hg/inc/hubConnect.h - lines changed 13, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 208, context: html, text, full: html, text
• add some printf's for hub clear
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 3, context: html, text, full: html, text
• added hgPal downloads for 13way
  • src/hg/makeDb/doc/calJac3.txt - lines changed 144, context: html, text, full: html, text
• now have pack and full modes. Coloring by strand is default. Needs a more useful way of drawing the lines that connect the blocks in pack mode. Maybe snake mode should be option in detail page? That way we can overload the track controls.
  • src/hg/hgTracks/snakeTrack.c - lines changed 380, context: html, text, full: html, text
• still under development.....
  • src/hg/hgTracks/snakeTrack.c - lines changed 45, context: html, text, full: html, text
• v252 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
• add bigWigAverageOverBed to userApps
  • src/makefile - lines changed 1, context: html, text, full: html, text
• fix problem with having "show" after "superTrack on" in the trackDb.txt file (reported by Ting's group)
  • src/hg/lib/trackHub.c - lines changed 3, context: html, text, full: html, text
• the beginnings of a program to validate hubPublic against the labels that are in the hub's themselves.
  • src/hg/utils/hubPublicCheck/hubPublicCheck.c - lines changed 85, context: html, text, full: html, text
  • src/hg/utils/hubPublicCheck/makefile - lines changed 19, context: html, text, full: html, text
• adding hubCheck and hubPublicCheck to the build. hubPublicCheck is called from my crontab now to check that the hubPublic table is consistent with what's in the hubPublic table
  • src/hg/utils/hubPublicCheck/hubPublicCheck.c - lines changed 64, context: html, text, full: html, text
  • src/hg/utils/makefile - lines changed 1, context: html, text, full: html, text
• remove install hgCgiData directory for user builds
  • src/hg/makeDb/hgCgiData/makefile - lines changed 1, context: html, text, full: html, text
• oops... didn't do this right the first time. #4039
  • src/hg/makeDb/hgCgiData/makefile - lines changed 2, context: html, text, full: html, text
• v252 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 1, context: html, text, full: html, text