File Changes for aamp

v256_preview to v256_preview2 (2011-08-16 to 2011-08-23) v256

• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/hgTables/bam.c
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/hgTracks/bamTrack.c
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/hgc/bamClick.c
  • lines changed 2, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/inc/bamFile.h
  • lines changed 52, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/inc/hgBam.h
  • lines changed 53, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
  • lines changed 11, context: html, text, full: html, text
    removed open, fetch, exists functions to make way for removing udcFUSE stuff
  • lines changed 4, context: html, text, full: html, text
    More udcFUSE stripping but also forget to remove the bamOpen function which has been moved to src/inc/bamFile.h
• src/hg/lib/bamFile.c
  • lines changed 308, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/lib/customFactory.c
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/lib/hgBam.c
  • lines changed 308, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
  • lines changed 40, context: html, text, full: html, text
    removed open, fetch, exists functions to make way for removing udcFUSE stuff
  • lines changed 2, context: html, text, full: html, text
    More udcFUSE stripping but also forget to remove the bamOpen function which has been moved to src/inc/bamFile.h
• src/hg/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/inc/bamFile.h
  • lines changed 132, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
  • lines changed 4, context: html, text, full: html, text
    deleted anything udcFUSE-related
  • lines changed 8, context: html, text, full: html, text
    made a spinoff function of bamFetch() that also handles an already-open bam file/index for cases where fetch is done within a loop
• src/inc/bamUdc.h
  • lines changed 132, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/lib/bamFile.c
  • lines changed 693, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
  • lines changed 116, context: html, text, full: html, text
    deleted anything udcFUSE-related
  • lines changed 29, context: html, text, full: html, text
    made a spinoff function of bamFetch() that also handles an already-open bam file/index for cases where fetch is done within a loop
• src/lib/bamUdc.c
  • lines changed 693, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch
• src/lib/makefile
  • lines changed 1, context: html, text, full: html, text
    Changes related to change source filenames around: bamUdc.ch -> bamFile.ch and bamFile.ch -> hgBam.ch