File Changes for hiram

v257_preview to v257_preview2 (2011-09-06 to 2011-09-13) v257

• src/hg/makeDb/doc/danRer7.txt
  • lines changed 14, context: html, text, full: html, text
    adding liftOver 7 to 6
• src/hg/makeDb/doc/sacCer3.txt
  • lines changed 135, context: html, text, full: html, text
    regModule done, 32 alignments displayed, blat server on, and starting UW Footprints
  • lines changed 14, context: html, text, full: html, text
    add iRow to maf
  • lines changed 32, context: html, text, full: html, text
    fixing some joinerCheck errors on oreganno track
• src/hg/makeDb/doc/xenTro3.txt
  • lines changed 268, context: html, text, full: html, text
    initial genome build and repeat masking
  • lines changed 69, context: html, text, full: html, text
    starting genbank run
  • lines changed 51, context: html, text, full: html, text
    fix genbank settings and add ctgPos2
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 33, context: html, text, full: html, text
    adding xenTro3
  • lines changed 2, context: html, text, full: html, text
    adjust alignments for xenTro3
  • lines changed 1, context: html, text, full: html, text
    fixup xenTro3 11.ooc location
• src/hg/makeDb/schema/joinerCheck/joinerCheck.c
  • lines changed 6, context: html, text, full: html, text
    indicate error for no operation specified
• src/hg/makeDb/schema/joinerCheck/makefile
  • lines changed 4, context: html, text, full: html, text
    add compile target and fix clean
• src/hg/makeDb/trackDb/README
  • lines changed 4, context: html, text, full: html, text
    add comment about ctgPos2 and url none
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    adding xenTro3 to the build
• src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.html
  • lines changed 129, context: html, text, full: html, text
    initial contents for this alignment track
• src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.ra
  • lines changed 242, context: html, text, full: html, text
    initial contents for this alignment track
  • lines changed 32, context: html, text, full: html, text
    change to psl from the mafNet files
• src/hg/makeDb/trackDb/sacCer/sacCer3/trackDb.ra
  • lines changed 3, context: html, text, full: html, text
    including the strainAlignments
• src/hg/makeDb/trackDb/xenTro/xenTro3/ctgPos2.html
  • lines changed 10, context: html, text, full: html, text
    initial contents for ctgPos2 track
  • lines changed 1, context: html, text, full: html, text
    better to open the directory at NCBI instead of downloading the file
• src/hg/makeDb/trackDb/xenTro/xenTro3/description.html
  • lines changed 131, context: html, text, full: html, text
    initial contents for xenTro3
• src/hg/makeDb/trackDb/xenTro/xenTro3/gap.html
  • lines changed 31, context: html, text, full: html, text
    initial contents for xenTro3
• src/hg/makeDb/trackDb/xenTro/xenTro3/gold.html
  • lines changed 23, context: html, text, full: html, text
    initial contents for xenTro3
• src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    initial contents for xenTro3
  • lines changed 15, context: html, text, full: html, text
    adding ctgPos2 table and search spec
  • lines changed 1, context: html, text, full: html, text
    turn off the url for ctgPos2
• src/lib/oldGff.c
  • lines changed 55, context: html, text, full: html, text
    rearrange static function definitions to avoid compiler problems on Suse linux