Commits for hiram
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v257_preview to v257_preview2 (2011-09-06 to 2011-09-13) v257
- rearrange static function definitions to avoid compiler problems on Suse linux
- initial contents for this alignment track
- src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.html - lines changed 129, context: html, text, full: html, text
- src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.ra - lines changed 242, context: html, text, full: html, text
- including the strainAlignments
- src/hg/makeDb/trackDb/sacCer/sacCer3/trackDb.ra - lines changed 3, context: html, text, full: html, text
- regModule done, 32 alignments displayed, blat server on, and starting UW Footprints
- src/hg/makeDb/doc/sacCer3.txt - lines changed 135, context: html, text, full: html, text
- change to psl from the mafNet files
- src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.ra - lines changed 32, context: html, text, full: html, text
- adding xenTro3
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 33, context: html, text, full: html, text
- initial genome build and repeat masking
- src/hg/makeDb/doc/xenTro3.txt - lines changed 268, context: html, text, full: html, text
- add iRow to maf
- src/hg/makeDb/doc/sacCer3.txt - lines changed 14, context: html, text, full: html, text
- adding liftOver 7 to 6
- src/hg/makeDb/doc/danRer7.txt - lines changed 14, context: html, text, full: html, text
- initial contents for xenTro3
- src/hg/makeDb/trackDb/xenTro/xenTro3/description.html - lines changed 131, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/xenTro3/gap.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/xenTro3/gold.html - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 7, context: html, text, full: html, text
- adding xenTro3 to the build
- src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
- adjust alignments for xenTro3
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
- starting genbank run
- src/hg/makeDb/doc/xenTro3.txt - lines changed 69, context: html, text, full: html, text
- fixup xenTro3 11.ooc location
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
- fixing some joinerCheck errors on oreganno track
- src/hg/makeDb/doc/sacCer3.txt - lines changed 32, context: html, text, full: html, text
- indicate error for no operation specified
- src/hg/makeDb/schema/joinerCheck/joinerCheck.c - lines changed 6, context: html, text, full: html, text
- fix genbank settings and add ctgPos2
- src/hg/makeDb/doc/xenTro3.txt - lines changed 51, context: html, text, full: html, text
- add compile target and fix clean
- src/hg/makeDb/schema/joinerCheck/makefile - lines changed 4, context: html, text, full: html, text
- adding ctgPos2 table and search spec
- src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 15, context: html, text, full: html, text
- initial contents for ctgPos2 track
- src/hg/makeDb/trackDb/xenTro/xenTro3/ctgPos2.html - lines changed 10, context: html, text, full: html, text
- better to open the directory at NCBI instead of downloading the file
- src/hg/makeDb/trackDb/xenTro/xenTro3/ctgPos2.html - lines changed 1, context: html, text, full: html, text
- turn off the url for ctgPos2
- src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 1, context: html, text, full: html, text
- add comment about ctgPos2 and url none
- src/hg/makeDb/trackDb/README - lines changed 4, context: html, text, full: html, text
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