Commits for hiram

v257_preview to v257_preview2 (2011-09-06 to 2011-09-13) v257

• rearrange static function definitions to avoid compiler problems on Suse linux
  • src/lib/oldGff.c - lines changed 55, context: html, text, full: html, text
• initial contents for this alignment track
  • src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.html - lines changed 129, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.ra - lines changed 242, context: html, text, full: html, text
• including the strainAlignments
  • src/hg/makeDb/trackDb/sacCer/sacCer3/trackDb.ra - lines changed 3, context: html, text, full: html, text
• regModule done, 32 alignments displayed, blat server on, and starting UW Footprints
  • src/hg/makeDb/doc/sacCer3.txt - lines changed 135, context: html, text, full: html, text
• change to psl from the mafNet files
  • src/hg/makeDb/trackDb/sacCer/sacCer3/strainAlignments.ra - lines changed 32, context: html, text, full: html, text
• adding xenTro3
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 33, context: html, text, full: html, text
• initial genome build and repeat masking
  • src/hg/makeDb/doc/xenTro3.txt - lines changed 268, context: html, text, full: html, text
• add iRow to maf
  • src/hg/makeDb/doc/sacCer3.txt - lines changed 14, context: html, text, full: html, text
• adding liftOver 7 to 6
  • src/hg/makeDb/doc/danRer7.txt - lines changed 14, context: html, text, full: html, text
• initial contents for xenTro3
  • src/hg/makeDb/trackDb/xenTro/xenTro3/description.html - lines changed 131, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/gap.html - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/gold.html - lines changed 23, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 7, context: html, text, full: html, text
• adding xenTro3 to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• adjust alignments for xenTro3
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• starting genbank run
  • src/hg/makeDb/doc/xenTro3.txt - lines changed 69, context: html, text, full: html, text
• fixup xenTro3 11.ooc location
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• fixing some joinerCheck errors on oreganno track
  • src/hg/makeDb/doc/sacCer3.txt - lines changed 32, context: html, text, full: html, text
• indicate error for no operation specified
  • src/hg/makeDb/schema/joinerCheck/joinerCheck.c - lines changed 6, context: html, text, full: html, text
• fix genbank settings and add ctgPos2
  • src/hg/makeDb/doc/xenTro3.txt - lines changed 51, context: html, text, full: html, text
• add compile target and fix clean
  • src/hg/makeDb/schema/joinerCheck/makefile - lines changed 4, context: html, text, full: html, text
• adding ctgPos2 table and search spec
  • src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 15, context: html, text, full: html, text
• initial contents for ctgPos2 track
  • src/hg/makeDb/trackDb/xenTro/xenTro3/ctgPos2.html - lines changed 10, context: html, text, full: html, text
• better to open the directory at NCBI instead of downloading the file
  • src/hg/makeDb/trackDb/xenTro/xenTro3/ctgPos2.html - lines changed 1, context: html, text, full: html, text
• turn off the url for ctgPos2
  • src/hg/makeDb/trackDb/xenTro/xenTro3/trackDb.ra - lines changed 1, context: html, text, full: html, text
• add comment about ctgPos2 and url none
  • src/hg/makeDb/trackDb/README - lines changed 4, context: html, text, full: html, text