File Changes for wong
switch to commits view, user indexv258_base to v259_preview (2011-10-10 to 2011-10-25) v259
- python/lib/ucscgenomics/cv.py
- lines changed 4, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/mkChangeNotes.py
- lines changed 700, context: html, text, full: html, text
separated out library stuff
- lines changed 4, context: html, text, full: html, text
changes name of variable that I already used, but not in scope or the same context, this fix is onyl for aesthetics
- python/lib/ucscgenomics/qa.py
- lines changed 123, context: html, text, full: html, text
started qa algorithms for checking track stuff
- lines changed 142, context: html, text, full: html, text
added new functions and some better outputting
- python/lib/ucscgenomics/test/test_cv
- lines changed 32, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/Antibody/NonmatchKey.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/Antibody/ValidStanza.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/CellLine/BlankKey.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/CellLine/ExtraKey.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/CellLine/MissingKey.ra
- lines changed 10, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/CellLine/NonmatchKey.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/CellLine/ValidStanza.ra
- lines changed 10, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/Mouse/NonmatchKey.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/test/test_cv_input/Mouse/ValidStanza.ra
- lines changed 9, context: html, text, full: html, text
cleaned up some cv validator stuff
- python/lib/ucscgenomics/track.py
- lines changed 6, context: html, text, full: html, text
added supplemental file support
- lines changed 8, context: html, text, full: html, text
added new property httpDownloadsPath, which is the symlinked directory that QA uses in their emails
- lines changed 13, context: html, text, full: html, text
added some stuff for QA functions
- lines changed 1, context: html, text, full: html, text
removed testing dir from qaInitDir
- lines changed 3, context: html, text, full: html, text
added some attributes for testing
- lines changed 1, context: html, text, full: html, text
added an attribute I will need in the future
- python/programs/mkChangeNotes/mkChangeNotes
- lines changed 398, context: html, text, full: html, text
stable version of mkChangeNotes, still very alpha
- lines changed 360, context: html, text, full: html, text
draft 2, reformatted output, changed how certain functions work, still could shed a lot of code, but conceptually it's there
- lines changed 36, context: html, text, full: html, text
some minor corrections and fixed a bug for calculating revoked files, pigeon hole expansion problem
- lines changed 95, context: html, text, full: html, text
added comments, changed how paths are printed, added automatic gigabyte printing for file sizes
- lines changed 47, context: html, text, full: html, text
added in solo release functionality, changed how certain things are diaplayed, loose mode for md5sum check
- lines changed 8, context: html, text, full: html, text
removed checking of table dropping, as the table list was generated off mdb, so it's redundant to the mdb errors, and there's no way to tell the state of the tables at time fo release
- lines changed 5, context: html, text, full: html, text
forgot to implement the round up for file sizes, it was in table sizes
- lines changed 3, context: html, text, full: html, text
calculates filesize on real file now, follows symlinks
- lines changed 1, context: html, text, full: html, text
added an empty line to make output consistent
- lines changed 22, context: html, text, full: html, text
changed persiting to untouched, make full mode default, new option is summary
- lines changed 42, context: html, text, full: html, text
made the output printing smarter, and not as much zeros
- lines changed 8, context: html, text, full: html, text
added back in null fizesize counts
- lines changed 1, context: html, text, full: html, text
corrected variable spelling error
- lines changed 345, context: html, text, full: html, text
refactored to allow for using unittest to unit test
- python/programs/mkChangeNotes/mkChangeNotes.py
- lines changed 6, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/CurrentMkChangeNotes.py
- python/programs/mkChangeNotes/tests/CurrentMkChangeNotes.pyc
- python/programs/mkChangeNotes/tests/mkChangeTest.py
- python/programs/mkChangeNotes/tests/release1test/wgEncodeTest.alpha.ra
- lines changed 73, context: html, text, full: html, text
renamed release1 state metaDb to alpha
- lines changed 73, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/release1test/wgEncodeTest.public.ra
- lines changed 73, context: html, text, full: html, text
started tests for mkChangeNotes, inserting initial round of metaDb states
- lines changed 73, context: html, text, full: html, text
renamed release1 state metaDb to alpha
- python/programs/mkChangeNotes/tests/release1test/wgEncodeTest.ra
- python/programs/mkChangeNotes/tests/release2test/wgEncodeTest.ra
- python/programs/mkChangeNotes/tests/release2v1test/wgEncodeTest.alpha.ra
- lines changed 143, context: html, text, full: html, text
started tests for mkChangeNotes, inserting initial round of metaDb states
- lines changed 143, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/release2v1test/wgEncodeTest.public.ra
- lines changed 73, context: html, text, full: html, text
started tests for mkChangeNotes, inserting initial round of metaDb states
- lines changed 73, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/release3test/wgEncodeTest.ra
- python/programs/mkChangeNotes/tests/release3v2test/wgEncodeTest.alpha.ra
- lines changed 137, context: html, text, full: html, text
started tests for mkChangeNotes, inserting initial round of metaDb states
- lines changed 137, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/release3v2test/wgEncodeTest.public.ra
- lines changed 143, context: html, text, full: html, text
started tests for mkChangeNotes, inserting initial round of metaDb states
- lines changed 143, context: html, text, full: html, text
removed old testing structure, and changes name of class in mkChangenotes
- python/programs/mkChangeNotes/tests/release4test/wgEncodeTest.ra
- python/programs/qaInit/qaInit
- lines changed 417, context: html, text, full: html, text
renamed qaInit.py to qaInit
- python/programs/qaInit/qaInit.py
- lines changed 26, context: html, text, full: html, text
some minor changes and subId change status ability
- lines changed 417, context: html, text, full: html, text
renamed qaInit.py to qaInit
- python/programs/qaUpdateMetadata/qaUpdateMetadata
- lines changed 81, context: html, text, full: html, text
first draft of qaUpdateMetaData
- lines changed 9, context: html, text, full: html, text
fixed a logic error for reporting
- src/hg/encode/encodeMkFilesList/encodeMkFilesList
- lines changed 1, context: html, text, full: html, text
added noupdate to the usage statement
- src/hg/encode/encodeValidate/doEncodeValidate.pl
- lines changed 23, context: html, text, full: html, text
first attempt for deprecated support
- lines changed 43, context: html, text, full: html, text
rebalanced the indents on doEncodeValidate to use only 4 spaces (removed tabs), fixed deprecated detection function
- lines changed 2, context: html, text, full: html, text
rebalanced indentation on isDeprecated function
- src/hg/encode/mkChangeNotes/mkChangeNotes
- lines changed 57, context: html, text, full: html, text
renamed mkChange notes, and stripped out stuff that goes into library, this is the frontend to the library
- src/hg/encode/mkChangeNotes/mkChangeNotes.py
- lines changed 118, context: html, text, full: html, text
second draft at packaging mkChangeNotes
- lines changed 681, context: html, text, full: html, text
renamed mkChange notes, and stripped out stuff that goes into library, this is the frontend to the library
- src/hg/encode/mkChangeNotes/tests/CurrentMkChangeNotes.py
- lines changed 122, context: html, text, full: html, text
modified mkChangeTest to handle packacked mkChangeNotes
- src/hg/encode/mkChangeNotes/tests/CurrentMkChangeNotes.pyc
- lines changed 0, context: html, text, full: html, text
modified mkChangeTest to handle packacked mkChangeNotes
- src/hg/encode/mkChangeNotes/tests/mkChangeTest.py
- lines changed 10, context: html, text, full: html, text
modified mkChangeTest to handle packacked mkChangeNotes
- lines changed 4, context: html, text, full: html, text
modified test to handle changes to mkChangeNotes
- src/hg/encode/qaInit/qaInit
- lines changed 43, context: html, text, full: html, text
added functionality to check with mkChangeNotes at runtime and compare to notes file to check if anythign changed since notes was checked in
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 2, context: html, text, full: html, text
added comment about term cell line validating
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra
- lines changed 8, context: html, text, full: html, text
added explanation of revoked status
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- lines changed 23, context: html, text, full: html, text
updated md5sums and added bais
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 348, context: html, text, full: html, text
commiting for willy, he added in geo sample accessions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeTest.ra
- lines changed 1, context: html, text, full: html, text
putting in a fake trackDb
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