File Changes for chinhli
switch to commits view, user indexv259_preview to v259_preview2 (2011-10-25 to 2011-11-01) v259
- python/lib/ucscgenomics/track.py
- python/programs/mkChangeNotes/mkChangeNotes
- lines changed 446, context: html, text, full: html, text
merge conflict resolved
- python/programs/qaInit/qaInit.py
- lines changed 417, context: html, text, full: html, text
merge conflict resolved
- python/programs/qaUpdateMetadata/qaUpdateMetadata
- src/hg/encode/encodeMkFilesList/encodeMkFilesList
- src/hg/encode/encodeReport/atticReport.sh
- src/hg/hgApi/hgApi.c
- src/hg/hgFileSearch/hgFileSearch.c
- src/hg/hgTracks/config.c
- src/hg/hgTracks/cytoBandTrack.c
- src/hg/hgTracks/hgTracks.c
- src/hg/hgTracks/imageV2.c
- src/hg/hgTracks/searchTracks.c
- src/hg/hgTracks/vcfTrack.c
- lines changed 102, context: html, text, full: html, text
merge conflict resolved
- src/hg/hgc/hgc.c
- lines changed 2, context: html, text, full: html, text
Create lincRNAs supertrack
- lines changed 1, context: html, text, full: html, text
Rename track lincRNAsIsoforms to lincRNAsTranscripts
- src/hg/htdocs/ENCODE/dataMatrix/chipMatrix.css
- src/hg/htdocs/ENCODE/dataMatrix/dataMatrix.css
- src/hg/htdocs/ENCODE/dataMatrix/dataSummary.css
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixHuman.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixInclude.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixMouse.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixHuman.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixMouse.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryHuman.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryInclude.html
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryMouse.html
- src/hg/htdocs/ENCODE/downloads.html
- src/hg/htdocs/ENCODE/releaseLog.html
- src/hg/htdocs/goldenPath/help/customTrackText.html
- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html
- src/hg/htdocs/goldenPath/pubs.html
- src/hg/htdocs/goldenPath/releaseLog.html
- src/hg/htdocs/style/encodeProject.css
- src/hg/inc/jsHelper.h
- src/hg/inc/vcfUi.h
- src/hg/js/ajax.js
- src/hg/js/encodeChipMatrix.js
- src/hg/js/encodeDataMatrix.js
- src/hg/js/encodeDataSummary.js
- src/hg/js/encodeProject.js
- src/hg/js/hgCustom.js
- src/hg/js/hgTracks.js
- lines changed 1956, context: html, text, full: html, text
merge conflict resolved
- src/hg/js/makefile
- src/hg/lib/jsHelper.c
- src/hg/lib/search.c
- src/hg/lib/vcfUi.c
- src/hg/makeDb/doc/bosTau4.txt
- src/hg/makeDb/doc/bosTau6.txt
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeMapability.release3.notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeCaltechHist.release1.notes
- lines changed 178, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeCaltechTfbs.release1.notes
- lines changed 284, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/doc/hg18.txt
- src/hg/makeDb/doc/hg19.txt
- lines changed 150, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/doc/melGal1.txt
- src/hg/makeDb/doc/nomLeu1.txt
- src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh
- src/hg/makeDb/genbank/etc/align.dbs
- src/hg/makeDb/genbank/etc/genbank.conf
- src/hg/makeDb/genbank/etc/hgwdev.dbs
- src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra
- lines changed 13, context: html, text, full: html, text
Initial set up for expression data of lincRNAs
- lines changed 10, context: html, text, full: html, text
Group lincRNAs microarray data
- src/hg/makeDb/hgKgGetText/hgKgGetText.c
- src/hg/makeDb/schema/all.joiner
- src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 140, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/human/geneReviews.html
- lines changed 23, context: html, text, full: html, text
Edit html based on feedback from Lauren
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 268, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCaltechRnaSeq.ra
- lines changed 856, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeChromatinMap.ra
- lines changed 541, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeCaltechRnaSeq.ra
- lines changed 856, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeChromatinMap.ra
- lines changed 541, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra
- lines changed 1256, context: html, text, full: html, text
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- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
- src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra
- lines changed 64, context: html, text, full: html, text
Create lincRNAs supertrack
- lines changed 175, context: html, text, full: html, text
finished lincRNAs with shadesOfSea color
- lines changed 6, context: html, text, full: html, text
Rename track lincRNAsIsoforms to lincRNAsTranscripts
- lines changed 8, context: html, text, full: html, text
Changed many lables names for lincRNAs
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
- lines changed 103, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 348, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
- lines changed 133, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlLongRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGencode.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeMapability.ra
- lines changed 104, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSydhTfbs.ra
- lines changed 357, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDnase.ra
- lines changed 654, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlLongRnaSeq.ra
- lines changed 35579, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGencode.ra
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGisRnaPet.ra
- lines changed 3550, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDnase.ra
- lines changed 4672, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- lines changed 16, context: html, text, full: html, text
Initial set up for expression data of lincRNAs
- lines changed 1, context: html, text, full: html, text
Add lincRNAs.html for track description
- lines changed 12, context: html, text, full: html, text
Covert the lincRNAs custom track to native UCSC GB track
- lines changed 1, context: html, text, full: html, text
initital work to use composite tracks for lincRNAs.
- lines changed 24, context: html, text, full: html, text
finished lincRNAs with shadesOfSea color
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
- lines changed 493, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra
- lines changed 916, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/iscaComposite.html
- lines changed 135, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/iscaRetrospectiveComposite.html
- lines changed 123, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/human/trackDb.ra
- src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechHist.ra
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechTfbs.ra
- lines changed 122, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechHist.ra
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.new.ra
- lines changed 668, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.ra
- lines changed 183, context: html, text, full: html, text
merge conflict resolved
- src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/pig/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/rat/rn4/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/turkey/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra
- src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
- src/hg/protein/lib/spKgMap.c
- src/lib/chainBlock.c
- src/lib/vcf.c
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