Commits for chinhli
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v259_preview to v259_preview2 (2011-10-25 to 2011-11-01) v259
- Initial set up for expression data of lincRNAs
- src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 16, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- merge conflict resolved
- merge conflict resolved
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 62, context: html, text, full: html, text
- Group lincRNAs microarray data
- src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra - lines changed 10, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- Add lincRNAs.html for track description
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- Merge branch 'master' into lincRNAs
- Merge branch 'master' into lincRNAs
- Merge branch 'master' into lincRNAs
- Covert the lincRNAs custom track to native UCSC GB track
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 12, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- Merge branch 'master' into lincRNAs
- initital work to use composite tracks for lincRNAs.
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
- merge conflict resolved
- python/lib/ucscgenomics/track.py - lines changed 26, context: html, text, full: html, text
- python/programs/mkChangeNotes/mkChangeNotes - lines changed 446, context: html, text, full: html, text
- python/programs/qaInit/qaInit.py - lines changed 417, context: html, text, full: html, text
- python/programs/qaUpdateMetadata/qaUpdateMetadata - lines changed 82, context: html, text, full: html, text
- src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 1, context: html, text, full: html, text
- src/hg/encode/encodeReport/atticReport.sh - lines changed 3, context: html, text, full: html, text
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 5, context: html, text, full: html, text
- src/hg/hgTracks/config.c - lines changed 9, context: html, text, full: html, text
- src/hg/hgTracks/cytoBandTrack.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 54, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTracks/vcfTrack.c - lines changed 102, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/chipMatrix.css - lines changed 4, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/dataMatrix.css - lines changed 41, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/dataSummary.css - lines changed 50, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixHuman.html - lines changed 8, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixInclude.html - lines changed 4, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeChipMatrixMouse.html - lines changed 7, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixHuman.html - lines changed 8, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixInclude.html - lines changed 4, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataMatrixMouse.html - lines changed 7, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryHuman.html - lines changed 8, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryInclude.html - lines changed 7, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/dataMatrix/encodeDataSummaryMouse.html - lines changed 7, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/downloads.html - lines changed 11, context: html, text, full: html, text
- src/hg/htdocs/ENCODE/releaseLog.html - lines changed 47, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/customTrackText.html - lines changed 3, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgTrackHubHelp.html - lines changed 4, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/pubs.html - lines changed 5, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/releaseLog.html - lines changed 46, context: html, text, full: html, text
- src/hg/htdocs/style/encodeProject.css - lines changed 62, context: html, text, full: html, text
- src/hg/js/encodeChipMatrix.js - lines changed 19, context: html, text, full: html, text
- src/hg/js/encodeDataMatrix.js - lines changed 39, context: html, text, full: html, text
- src/hg/js/encodeDataSummary.js - lines changed 30, context: html, text, full: html, text
- src/hg/js/encodeProject.js - lines changed 14, context: html, text, full: html, text
- src/hg/js/hgTracks.js - lines changed 1956, context: html, text, full: html, text
- src/hg/makeDb/doc/bosTau4.txt - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/doc/bosTau6.txt - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeMapability.release3.notes - lines changed 86, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhTfbs.release1.notes - lines changed 66, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeCaltechHist.release1.notes - lines changed 178, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccMm9/wgEncodeCaltechTfbs.release1.notes - lines changed 284, context: html, text, full: html, text
- src/hg/makeDb/doc/hg18.txt - lines changed 43, context: html, text, full: html, text
- src/hg/makeDb/doc/hg19.txt - lines changed 150, context: html, text, full: html, text
- src/hg/makeDb/doc/melGal1.txt - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/doc/nomLeu1.txt - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/doc/ucscGenes/hg19.ucscGenes13.csh - lines changed 51, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/genbank.conf - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/hgKgGetText/hgKgGetText.c - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/schema/all.joiner - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cow/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 140, context: html, text, full: html, text
- src/hg/makeDb/trackDb/dog/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 268, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeCaltechRnaSeq.ra - lines changed 856, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeChromatinMap.ra - lines changed 541, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeCaltechRnaSeq.ra - lines changed 856, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeChromatinMap.ra - lines changed 541, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.new.ra - lines changed 1256, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 26, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 103, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 348, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 133, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlLongRnaSeq.ra - lines changed 57, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGencode.ra - lines changed 99, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeMapability.ra - lines changed 104, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSydhTfbs.ra - lines changed 357, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDnase.ra - lines changed 654, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile - lines changed 43, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlLongRnaSeq.ra - lines changed 35579, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGencode.ra - lines changed 99, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGisRnaPet.ra - lines changed 3550, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDnase.ra - lines changed 4672, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.html - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 70, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html - lines changed 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 70, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 65, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.html - lines changed 32, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.html - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 493, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 916, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/iscaComposite.html - lines changed 135, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/iscaRetrospectiveComposite.html - lines changed 123, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.chainNet.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 75, context: html, text, full: html, text
- src/hg/makeDb/trackDb/lizard/trackDb.chainNet.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechHist.ra - lines changed 28, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCaltechTfbs.ra - lines changed 122, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/makefile - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechHist.ra - lines changed 93, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.new.ra - lines changed 668, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechTfbs.ra - lines changed 183, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra - lines changed 18, context: html, text, full: html, text
- src/hg/makeDb/trackDb/opossum/monDom5/trackDb.chainNet.ra - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pig/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/platypus/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rat/rn4/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra - lines changed 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/turkey/trackDb.chainNet.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/xenTro/xenTro2/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra - lines changed 4, context: html, text, full: html, text
- src/hg/protein/lib/spKgMap.c - lines changed 11, context: html, text, full: html, text
- merge conflict resolved
- Merge branch 'master' into lincRNAs
- Merge branch 'master' into lincRNAs
- Create lincRNAs supertrack
- src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 64, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- finished lincRNAs with shadesOfSea color
- src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 175, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 24, context: html, text, full: html, text
- Merge branch 'master' into lincRNAs
- Added macEug2 - Wallaby
- src/hg/makeDb/genbank/etc/align.dbs - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/genbank/etc/hgwdev.dbs - lines changed 1, context: html, text, full: html, text
- Rename track lincRNAsIsoforms to lincRNAsTranscripts
- src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 6, context: html, text, full: html, text
- Edit html based on feedback from Lauren
- src/hg/makeDb/trackDb/human/geneReviews.html - lines changed 23, context: html, text, full: html, text
- Changed many lables names for lincRNAs
- src/hg/makeDb/trackDb/human/hg19/lincRNAs.ra - lines changed 8, context: html, text, full: html, text
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