File Changes for angie

v261_preview to v261_preview2 (2011-12-13 to 2011-12-20) v261

• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    MLQ #6291 (pgSNP format): the pgSnp lib function printSeqCodDisplaywas firing off a query to knownGene without first testing whether knownGene exists, causing error for knownGene-less databases. Now the lib function takes genePredTable as argument and tests existence before querying.
  • lines changed 2, context: html, text, full: html, text
    MLQ #6291: per Greg's request, updating pgSnp codon display tables to use<table class="descTbl"> instead of setting properties like borderwidth etc.
• src/hg/hgc/vcfClick.c
  • lines changed 3, context: html, text, full: html, text
    MLQ #6291 (pgSNP format): the pgSnp lib function printSeqCodDisplaywas firing off a query to knownGene without first testing whether knownGene exists, causing error for knownGene-less databases. Now the lib function takes genePredTable as argument and tests existence before querying.
• src/hg/inc/pgSnp.h
  • lines changed 1, context: html, text, full: html, text
    MLQ #6291 (pgSNP format): the pgSnp lib function printSeqCodDisplaywas firing off a query to knownGene without first testing whether knownGene exists, causing error for knownGene-less databases. Now the lib function takes genePredTable as argument and tests existence before querying.
• src/hg/lib/pgSnp.c
  • lines changed 10, context: html, text, full: html, text
    MLQ #6291 (pgSNP format): the pgSnp lib function printSeqCodDisplaywas firing off a query to knownGene without first testing whether knownGene exists, causing error for knownGene-less databases. Now the lib function takes genePredTable as argument and tests existence before querying.
  • lines changed 2, context: html, text, full: html, text
    MLQ #6291: per Greg's request, updating pgSnp codon display tables to use<table class="descTbl"> instead of setting properties like borderwidth etc.
• src/inc/common.mk
  • lines changed 1, context: html, text, full: html, text
    Updating local default version of samtools to 0.1.18.