Commits for wong

v261_base to v262_preview (2012-01-03 to 2012-01-10) v262

• renamed qaRaDiff to raDiff
  • src/hg/encode/qaRaDiff/makefile - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/qaRaDiff/qaRaDiff - lines changed 51, context: html, text, full: html, text
  • src/hg/encode/raDiff/makefile - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/raDiff/raDiff - lines changed 51, context: html, text, full: html, text
• changed whitespace to 4 spaces instead of tabs
  • src/hg/encode/raDiff/raDiff - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• first draft of raMerging functions
  • python/lib/ucscgenomics/ra.py - lines changed 50, context: html, text, full: html, text
  • python/lib/ucscgenomics/ucscUtils.py - lines changed 94, context: html, text, full: html, text
  • src/hg/encode/raMerge/makefile - lines changed 27, context: html, text, full: html, text
  • src/hg/encode/raMerge/raMerge - lines changed 31, context: html, text, full: html, text
• fixed makefile name
  • src/hg/encode/raDiff/makefile - lines changed 2, context: html, text, full: html, text
• added in new tracks to sydh tfbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 965, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 128, context: html, text, full: html, text
• added in new uw dgf tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 233, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 85, context: html, text, full: html, text
• added in new haib tfbs tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 1342, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release2.ra - lines changed 254, context: html, text, full: html, text
• added in new open chrom dnase tracks
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 633, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.new.ra - lines changed 122, context: html, text, full: html, text
• added release number to releaseLog value of the sql file
  • src/hg/encode/encodeQaInit/encodeQaInit - lines changed 2, context: html, text, full: html, text
• no more missed duplicated comments
  • python/lib/ucscgenomics/ucscUtils.py - lines changed 4, context: html, text, full: html, text
• added in bais
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 59, context: html, text, full: html, text
• added functionality to automatically set self scheduling to 19, complains on failure, but doesn't die.
  • src/hg/encode/encodeMkFilesList/encodeMkFilesList - lines changed 6, context: html, text, full: html, text
• corrected some metadata errors
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 25, context: html, text, full: html, text
• removed erroneous accession
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 13, context: html, text, full: html, text
• had drop vs new backwards
  • python/lib/ucscgenomics/ra.py - lines changed 3, context: html, text, full: html, text
• moved old version to .pl
  • src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease - lines changed 442, context: html, text, full: html, text
  • src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease.pl - lines changed 442, context: html, text, full: html, text
• first draft of python verison of encodeQaPrepareReleae
  • src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease - lines changed 151, context: html, text, full: html, text
• correct wrong type of quotes
  • python/lib/ucscgenomics/cv.py - lines changed 1, context: html, text, full: html, text