Commits for angie
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v265_preview2 to v265_base (2012-03-20 to 2012-03-27) v265
- Feature #6152 (Variant Annotation Tool): Initial work, squashed infrom origin/annoGrator branch. Superclasses annoColumn, annoFilter,
annoRow, annoStreamer, annoGrator, and annoFormatter define the core
interfaces for passing data and configuration to and from components.
The annoGrator superclass can join annoRows on position and pass
forward all rows of secondary source. The annoGratorQuery module
orchestrates the passing of annoRows between the primary source,
annoGrator(s) and annoFormatter(s). The subclasses annoStreamDb and
annoFormatTab, together with hg/lib/tests/annoGratorTester.c, can join
columns of two database tables such as hg19's pgNA12878 and knownGene
into tab-separated output.
- src/hg/inc/annoStreamDb.h - lines changed 14, context: html, text, full: html, text
- src/hg/lib/annoStreamDb.c - lines changed 187, context: html, text, full: html, text
- src/hg/lib/tests/annoGratorTester.c - lines changed 117, context: html, text, full: html, text
- src/hg/lib/tests/annoGratorTests.mk - lines changed 22, context: html, text, full: html, text
- src/hg/lib/tests/expected/annoGrator/pgSnpDbToTabOut.txt - lines changed 4, context: html, text, full: html, text
- src/hg/lib/tests/expected/annoGrator/pgSnpKgDbToTabOutShort.txt - lines changed 4, context: html, text, full: html, text
- src/hg/lib/tests/makefile - lines changed 8, context: html, text, full: html, text
- src/inc/annoFormatTab.h - lines changed 11, context: html, text, full: html, text
- src/inc/annoFormatter.h - lines changed 60, context: html, text, full: html, text
- src/inc/annoGratorQuery.h - lines changed 44, context: html, text, full: html, text
- src/inc/annoStreamer.h - lines changed 88, context: html, text, full: html, text
- src/lib/annoFormatTab.c - lines changed 149, context: html, text, full: html, text
- src/lib/annoFormatter.c - lines changed 119, context: html, text, full: html, text
- src/lib/annoGratorQuery.c - lines changed 161, context: html, text, full: html, text
- src/lib/annoStreamer.c - lines changed 96, context: html, text, full: html, text
- Track #7090 (ISCA update): Adding abbreviations for several morevariant origin terms from John Lopez (NCBI).
- src/hg/hgTracks/gvfTrack.c - lines changed 8, context: html, text, full: html, text
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