All File Changes

v270_base to v271_preview (2012-07-17 to 2012-07-24) v271

• src/ameme/ameme.c
  • lines changed 0, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/altSplice/affySplice/altProbes.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
  • lines changed 2, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/encode/DAFs/3.0/hg19/wgEncodeUncBsuProtGenc.daf
  • lines changed 1, context: html, text, full: html, text
    fixing compositePrefix
  • lines changed 2, context: html, text, full: html, text
    update comments
• src/hg/encode/DAFs/3.0/mm9/wgEncodePsuDnase.daf
  • lines changed 6, context: html, text, full: html, text
    Added updates to Dnase DAF. Redmine #109.
• src/hg/encode/encodeQaInit/encodeQaInit
  • lines changed 7, context: html, text, full: html, text
    added error message, and made autohelp off, also forgot to indent writeScriptOut last time
• src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease
  • lines changed 2, context: html, text, full: html, text
    make the selection more strict for detecting the composite name in a filename
• src/hg/encode/getTrackReferences/getTrackReferences
  • lines changed 2, context: html, text, full: html, text
    removing prog= so default behavior happens
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 4, context: html, text, full: html, text
    fixed html table error found by htmlCheck
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/encode/lib/encodePatchTdb.c
  • lines changed 0, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/encode/raDiff/raDiff
  • lines changed 5, context: html, text, full: html, text
    removed autohelp
  • lines changed 6, context: html, text, full: html, text
    added reverse mode
• src/hg/encode/validateCv/validateCv.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 12, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/gisaid/gisaidSample/gisaidSample.c
  • lines changed 2, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/gisaid/gisaidSubj/gisaidSubj.c
  • lines changed 2, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/gisaid/gisaidTable/gisaidTable.c
  • lines changed 2, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/gsid/gsidTable/gsidTable.c
  • lines changed 4, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/hgApi/hgApi.c
  • lines changed 5, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/hgFileSearch/hgFileSearch.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgGateway/hgGateway.c
  • lines changed 0, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/hgLogin/hgLogin.c
  • lines changed 7, context: html, text, full: html, text
    Bug 8341 note 18 and 19 use 'The username or password you entered is incorrect.' for login panel when wrong user name and/or password is entered.
• src/hg/hgTables/usage.c
  • lines changed 5, context: html, text, full: html, text
    Added info about the define regions button
• src/hg/hgText/hgText.c
  • lines changed 2, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 6, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/bamTrack.c
  • lines changed 1, context: html, text, full: html, text
    Bug #8429: one more fix required: use SETTING_IS_ON macro in hgTracks too, not just hgTrackUi. oops! Thanks Brooke.
  • lines changed 3, context: html, text, full: html, text
    After fixing Bug #8420, found one more place where bam track shoulduse SETTING_IS_ON. (I don't think the setting in question is used
    by any bam tracks, so this shouldn't change anything.)
    
• src/hg/hgTracks/config.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/expRatioTracks.c
  • lines changed 2, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/hgTracks.c
  • lines changed 25, context: html, text, full: html, text
    Make subtracks in dense use composite, not view label as noticed by gencode hub user Andrea. Also add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/imageV2.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/searchTracks.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgTracks/simpleTracks.c
  • lines changed 5, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgc/expClick.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgc/hgc.c
  • lines changed 2, context: html, text, full: html, text
    fixing hgc since htmlCheck found missing /BODY tag
  • lines changed 17, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/hgc/rnaFoldClick.c
  • lines changed 8, context: html, text, full: html, text
    errAbort on missing organism; can happen in mirrors (see #8490)
• src/hg/htdocs/goldenPath/help/hgTablesHelp.html
  • lines changed 4, context: html, text, full: html, text
    Added mention of teh define regions button
• src/hg/htdocs/goldenPath/newsarch.html
  • lines changed 15, context: html, text, full: html, text
    made a few corrections per code review #8513
• src/hg/htdocs/images/Papio_hamadryas_anubis.jpg
  • lines changed 0, context: html, text, full: html, text
    removed Papio_hamadryas_anubis.jpg. Use the same picture from papHam1 for papHam2.
• src/hg/htdocs/indexNews.html
  • lines changed 12, context: html, text, full: html, text
    made a few corrections per code review #8513
• src/hg/lib/cart.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/encode/encodeExp.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/fileUi.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    open downloads link in a different window (#3044)
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/mdb.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/search.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/trackDbCustom.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/lib/web.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/makeDb/doc/choHof1.txt
  • lines changed 19, context: html, text, full: html, text
    done and in the pushQ 006261 redmin 7668
• src/hg/makeDb/doc/dasNov3.txt
  • lines changed 18, context: html, text, full: html, text
    done and in the pushQ
• src/hg/makeDb/doc/dipOrd1.txt
  • lines changed 18, context: html, text, full: html, text
    done and in the pushQ
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlShortRnaSeq.release3.notes
  • lines changed 123, context: html, text, full: html, text
    Revising notes file to have supplemental and to have the correct attic lists
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibMethylRrbs.release3.notes
  • lines changed 955, context: html, text, full: html, text
    Notes file for release3 for Haib RRBS
  • lines changed 5, context: html, text, full: html, text
    Needed to sort out some attic confusion
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUncBsuProt.release1.notes
  • lines changed 52, context: html, text, full: html, text
    Redoing release 1 notes in correct version
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release6.notes
  • lines changed 2369, context: html, text, full: html, text
    adding in notes file for us dnase
  • lines changed 384, context: html, text, full: html, text
    updated notes
  • lines changed 5, context: html, text, full: html, text
    removed comma from file list
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release5.notes
  • lines changed 2538, context: html, text, full: html, text
    added in first version of notes
  • lines changed 223, context: html, text, full: html, text
    updating notes to reflect K562/ZNF pull
• src/hg/makeDb/doc/eriEur1.txt
  • lines changed 18, context: html, text, full: html, text
    done and in the pushQ
• src/hg/makeDb/doc/felCat4.txt
  • lines changed 14, context: html, text, full: html, text
    felCat5 done and in the pushQ
• src/hg/makeDb/doc/felCat5.txt
  • lines changed 19, context: html, text, full: html, text
    felCat5 done and in the pushQ
• src/hg/makeDb/doc/gadMor1.txt
  • lines changed 19, context: html, text, full: html, text
    gadMor1 done and in the pushQ
• src/hg/makeDb/doc/hg19.txt
  • lines changed 7, context: html, text, full: html, text
    done with the patch 9 build
  • lines changed 5, context: html, text, full: html, text
    loaded tables for the primary track
  • lines changed 8, context: html, text, full: html, text
    Load COSMIC v60
• src/hg/makeDb/doc/hg19Patch9.txt
  • lines changed 586, context: html, text, full: html, text
    running repeat masker then ready for alignments
  • lines changed 70, context: html, text, full: html, text
    done with the patch 9 build
  • lines changed 3, context: html, text, full: html, text
    loaded tables for the primary track
• src/hg/makeDb/doc/rheMac3.txt
  • lines changed 41, context: html, text, full: html, text
    Finished LASTZ rheMac3 vs. rn5.
• src/hg/makeDb/doc/rn5.txt
  • lines changed 15, context: html, text, full: html, text
    add instructions for making fasta files needed in the mm10 UCSC genes build
  • lines changed 54, context: html, text, full: html, text
    Finished LASTZ rheMac3 vs. rn5.
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/makeDb/mdbUpdate/mdbUpdate.c
  • lines changed 0, context: html, text, full: html, text
    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
  • lines changed 4, context: html, text, full: html, text
    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    adding choHof1 to transMapDb list
• src/hg/makeDb/trackDb/alpaca/vicPac1/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/alpaca/vicPac1/gold.html
  • lines changed 21, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/alpaca/vicPac1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/armadillo/dasNov3/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/armadillo/dasNov3/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/armadillo/dasNov3/trackDb.ra
  • lines changed 19, context: html, text, full: html, text
    setting default visibilities
• src/hg/makeDb/trackDb/baboon/papAnu1/description.html
  • lines changed 62, context: html, text, full: html, text
    Delete all html of papAnu1
• src/hg/makeDb/trackDb/baboon/papAnu1/gap.html
  • lines changed 64, context: html, text, full: html, text
    Delete all html of papAnu1
• src/hg/makeDb/trackDb/baboon/papAnu1/gold.html
  • lines changed 23, context: html, text, full: html, text
    Delete all html of papAnu1
• src/hg/makeDb/trackDb/baboon/papAnu1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    Delete all html of papAnu1
• src/hg/makeDb/trackDb/baboon/papAnu2/description.html
  • lines changed 62, context: html, text, full: html, text
    Initial descriptions for papAnu2.
• src/hg/makeDb/trackDb/baboon/papAnu2/gap.html
  • lines changed 31, context: html, text, full: html, text
    Initial descriptions for papAnu2.
• src/hg/makeDb/trackDb/baboon/papAnu2/gold.html
  • lines changed 33, context: html, text, full: html, text
    Initial descriptions for papAnu2.
• src/hg/makeDb/trackDb/baboon/papAnu2/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    Initial descriptions for papAnu2.
• src/hg/makeDb/trackDb/baboon/papHam1/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/baboon/papHam1/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/birds/melUnd1/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/birds/melUnd1/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/bushbaby/otoGar3/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/bushbaby/otoGar3/gold.html
  • lines changed 21, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/cat/felCat5/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    setting default tracks
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    added Ren's lab stomach protocol
  • lines changed 3, context: html, text, full: html, text
    add Ren lab info to stomach entry
  • lines changed 1, context: html, text, full: html, text
    correct protocol entry
  • lines changed 61, context: html, text, full: html, text
    Added 3 cell lines and added protocol link for a 4th cell line. Redmine #7502 #7503.
  • lines changed 15, context: html, text, full: html, text
    Registered antibody for PSU.
  • lines changed 1, context: html, text, full: html, text
    Fixing missing term.
  • lines changed 35, context: html, text, full: html, text
    Added 2 new cell lines for the Stam lab for Mouse submissions.
  • lines changed 2, context: html, text, full: html, text
    Fixed typo in type spelling.
  • lines changed 3, context: html, text, full: html, text
    Fixed spelling of KO instead of K0. Updated Vendor Name.
  • lines changed 4, context: html, text, full: html, text
    Fixed vendor id for antibody, 2 numbers were switched.
  • lines changed 38, context: html, text, full: html, text
    Fixes from code review for CV
  • lines changed 151, context: html, text, full: html, text
    Fixes for CV from code review
  • lines changed 157, context: html, text, full: html, text
    Adding Broad Antibodies to CV
  • lines changed 3, context: html, text, full: html, text
    Changing sex on a few cell types in CV
  • lines changed 1, context: html, text, full: html, text
    The vendorId in the tag was incorrect was FLI1SC365 should FLI1SC356.
  • lines changed 30, context: html, text, full: html, text
    Added new registraion for Ren lab, includes age, strain and cell.
  • lines changed 1, context: html, text, full: html, text
    Forgot type age for stanza.
  • lines changed 1, context: html, text, full: html, text
    Missed spelling of tag.
  • lines changed 2, context: html, text, full: html, text
    Added missing order urls.
  • lines changed 5, context: html, text, full: html, text
    Added new strain.
  • lines changed 1, context: html, text, full: html, text
    Fixing typo in CV
  • lines changed 12, context: html, text, full: html, text
    adding in saha treatments for open chrom
  • lines changed 47, context: html, text, full: html, text
    Added 2 new cell registration for Hardison lab. Also correct a few typo's in the cv.
  • lines changed 3, context: html, text, full: html, text
    Fixing a few broken links
  • lines changed 11, context: html, text, full: html, text
    Deprecating ZNF knockout treatments- data withdrawn
• src/hg/makeDb/trackDb/cv/beta/cv.ra
  • lines changed 287, context: html, text, full: html, text
    Moving alpha CV to beta
• src/hg/makeDb/trackDb/cv/public/cv.ra
  • lines changed 783, context: html, text, full: html, text
    Moved over approved changes from beta/cv.ra to public/cv.ra. Redmine #8500.
  • lines changed 6, context: html, text, full: html, text
    Changed protocol refrence lines for 6 cells lines that don't have approved growth protocols yet.
• src/hg/makeDb/trackDb/dolphin/turTru2/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/dolphin/turTru2/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gadMor/gadMor1/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gadMor/gadMor1/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gadMor/gadMor1/trackDb.ra
  • lines changed 14, context: html, text, full: html, text
    setting default tracks
• src/hg/makeDb/trackDb/gibbon/nomLeu2/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/gibbon/nomLeu2/gold.html
  • lines changed 21, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/hedgehog/eriEur1/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/hedgehog/eriEur1/gold.html
  • lines changed 22, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
  • lines changed 15, context: html, text, full: html, text
    setting default visibility tracks
• src/hg/makeDb/trackDb/human/hg19/altSeqComposite9.ra
  • lines changed 104, context: html, text, full: html, text
    specific for patch9
• src/hg/makeDb/trackDb/human/hg19/genotypeArrays.html
  • lines changed 13, context: html, text, full: html, text
    Bob asked for this change because he's going to be showing this description page in a workshop and he wants to show how easy it is to see the color description
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 4857, context: html, text, full: html, text
    Adding new genedenovos and transcript denovos
  • lines changed 54, context: html, text, full: html, text
    Adding new submissions
  • lines changed 621, context: html, text, full: html, text
    adding expIds
  • lines changed 10, context: html, text, full: html, text
    Revoking LID47806
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 520, context: html, text, full: html, text
    Removed origAssembly, added md5sums, swapped some attic tags, added some new stanzas
  • lines changed 2, context: html, text, full: html, text
    Needed to sort out some attic confusion
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 2731, context: html, text, full: html, text
    added in new haib tracks
  • lines changed 1093, context: html, text, full: html, text
    adding in new tracks for haib tfbs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 937, context: html, text, full: html, text
    added in new open chrom dnase tracks
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtGenc.ra
  • lines changed 149, context: html, text, full: html, text
    adding new data
  • lines changed 1, context: html, text, full: html, text
    added protocol to expVar
  • lines changed 1, context: html, text, full: html, text
    I think this is for mdbPrint after adding protocol in expVar
  • lines changed 49, context: html, text, full: html, text
    added expId
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
  • lines changed 17, context: html, text, full: html, text
    removing K562/ZNF from dev as requested by richard
  • lines changed 17, context: html, text, full: html, text
    received an error reason
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 13, context: html, text, full: html, text
    removing K562/ZNF from dev as requested by richard
  • lines changed 13, context: html, text, full: html, text
    received an error reason
  • lines changed 983, context: html, text, full: html, text
    added in new uw dgf tracks
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 116, context: html, text, full: html, text
    cleaned up some metaData
  • lines changed 431, context: html, text, full: html, text
    adding expIds and accession
  • lines changed 91, context: html, text, full: html, text
    removing K562/ZNF from dev as requested by richard
  • lines changed 91, context: html, text, full: html, text
    received an error reason
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
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    added in new histone tracks
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    added md5sums
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    added in expIds
  • lines changed 51, context: html, text, full: html, text
    removing K562/ZNF from dev as requested by richard
  • lines changed 51, context: html, text, full: html, text
    received an error reason
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwRepliSeq.ra
  • lines changed 17, context: html, text, full: html, text
    fixed double-compression gzip-tar-gzip issue for UwRepliSeq. ticket 8477
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethylRrbs.ra
  • lines changed 522, context: html, text, full: html, text
    Staging HAIB RRBS (Release 3) on beta (redmine #6773)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUncBsuProt.ra
  • lines changed 64, context: html, text, full: html, text
    Staging on beta UNC/BSU Proteogenomics (Release 2) RM#6805
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwAffyExonArray.ra
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    Restaging Univ Wash Affy Exon Array with metaDB changes revoking ZNF experiments (Release 3) RM#8547/8538
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDnase.ra
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    Staging UW DNaseI HS (Release 6) on beta (redmine #8487)
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    Matt made some metadata changes (redmine #8487)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwHistone.ra
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    Staging on beta Univ Wash Histone (Release 5) RM# 8081
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    Restaging metadata, now that K562/ZNF knockouts pulled for Univ Wash Histone (Release5) RM8081)
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwRepliSeq.ra
  • lines changed 17, context: html, text, full: html, text
    fixed double-compression gzip-tar-gzip issue for UwRepliSeq. ticket 8477
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwTfbs.ra
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    Staged on beta (without commit), now staging on public for Univ Wash CTCF Binding Tfbs (Release 4)-but remaining release 3 on public, only metaDb changes- RM#6811
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUncBsuProt.ra
  • lines changed 64, context: html, text, full: html, text
    Staging on public hg19 UNC BSU Proteogenomics (Release 2) RM#6805
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwAffyExonArray.ra
  • lines changed 17, context: html, text, full: html, text
    Staging on public for patch of Univ Wash Affy Exon Array (Release 3) RM#8547.8538
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDnase.ra
  • lines changed 2370, context: html, text, full: html, text
    Releasing UW DNaseI HS (Release 6) to the RR (redmine #8487)
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwHistone.ra
  • lines changed 2643, context: html, text, full: html, text
    Staging on public Univ Wash Histone (Release5) RM#8081/RM#8538
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwTfbs.ra
  • lines changed 634, context: html, text, full: html, text
    Staged on beta (without commit), now staging on public for Univ Wash CTCF Binding Tfbs (Release 4)-but remaining release 3 on public, only metaDb changes- RM#6811
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    testing patch9 tracks
  • lines changed 31, context: html, text, full: html, text
    Track #8360 (snp137): adding search specs (thx Greg!)
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    Changing tags to not have numerals or dashes in the front
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Staging on beta UNC/BSU Proteogenomics (Release 2) RM#6805
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    Staging UW DNaseI HS (Release 6) on beta (redmine #8487)
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    Staging on public hg19 UNC BSU Proteogenomics (Release 2) RM#6805
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    Adding new release for CSHL Long
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    Staged on beta (without commit), now staging on public for Univ Wash CTCF Binding Tfbs (Release 4)-but remaining release 3 on public, only metaDb changes- RM#6811
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    Staging HAIB RRBS (Release 3) on beta (redmine #6773)
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    Staging on beta Univ Wash Histone (Release 5) RM# 8081
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    making initial patch for uw affy removal of k562 data
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    Restaging Univ Wash Affy Exon Array with metaDB changes revoking ZNF experiments (Release 3) RM#8547/8538
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    Staging on public for patch of Univ Wash Affy Exon Array (Release 3) RM#8547.8538
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    Releasing UW DNaseI HS (Release 6) to the RR (redmine #8487)
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    Staging on public Univ Wash Histone (Release5) RM#8081/RM#8538
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html
  • lines changed 194, context: html, text, full: html, text
    Adding new release for CSHL Long
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra
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    Adding new release for CSHL Long
  • lines changed 793, context: html, text, full: html, text
    Adding the Transcript Denovo stanzas commented out. There is debate on if we are to display them
  • lines changed 154, context: html, text, full: html, text
    Adding new submissions
  • lines changed 35, context: html, text, full: html, text
    Revoking LID47806
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.html
  • lines changed 12, context: html, text, full: html, text
    Working on the release notes
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    Made appropriate corrections to the description page for HAIB RRBS (redmine #6773)
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    Made some additional changes (redmine #6773)
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.release3.ra
  • lines changed 699, context: html, text, full: html, text
    Added two new experiments, pulled 6 experiments out of the attic, significantly changed the fileUI and the matrix, changed the data to 9 +
  • lines changed 16, context: html, text, full: html, text
    Needed to sort out some attic confusion
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    Fixing errors found in QA, #6773 Note22
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    Adding a few more fixes for Note 22
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra
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    added in new haib tracks
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    adding in new tracks for haib tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra
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    added in new open chrom dnase tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRnaSeqSuper.html
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    Updating algorithm capabilities in track description
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.html
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    polish release note in corresponding to Brian's recommendation
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    clean up release note
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.ra
  • lines changed 1, context: html, text, full: html, text
    adding html entry in the top stanza
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    corrected a typo
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.html
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    create html, copy over from the old track for now
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.release1.ra
  • lines changed 36, context: html, text, full: html, text
    adding new data
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    add tier info
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    hide tier info
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    adding html entry in the top stanza
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html
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    adding patch html
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    added patch notes
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    corrected revoke message for uw affy exon
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    more html corrections
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    removing more zinc finger related messages
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    clarifying revoke message
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.ra
  • lines changed 1523, context: html, text, full: html, text
    making initial patch for uw affy removal of k562 data
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    removing the bad K562 Stanzas
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    adding patch html
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    added in some changed for the K562/ZNF revoke for uw affy exon
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.html
  • lines changed 2, context: html, text, full: html, text
    making small edits (RM#8502) to html file for Univ Wash Affy Exon Arry (Release 3) RM#6777
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.ra
  • lines changed 80, context: html, text, full: html, text
    removing K562/ZNF stanzas from uw dnase
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    added in new uw dgf tracks
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.html
  • lines changed 116, context: html, text, full: html, text
    added in new html
  • lines changed 8, context: html, text, full: html, text
    fixed uw dnase for qa
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    qa fixes for uw dnase mark 2
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra
  • lines changed 165, context: html, text, full: html, text
    fixed labels
  • lines changed 1, context: html, text, full: html, text
    added in new html
  • lines changed 488, context: html, text, full: html, text
    removing K562/ZNF data, adding replicate filterCompitste
  • lines changed 285, context: html, text, full: html, text
    fixed uw dnase for qa
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    qa fixes for uw dnase mark 2
  • lines changed 1, context: html, text, full: html, text
    added breaks for easier reading
  • lines changed 7, context: html, text, full: html, text
    changing control to Control
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.html
  • lines changed 94, context: html, text, full: html, text
    moving over to release 5 html
  • lines changed 2, context: html, text, full: html, text
    qa fixes for uw histone html file
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra
  • lines changed 109, context: html, text, full: html, text
    added in new histone tracks
  • lines changed 24, context: html, text, full: html, text
    fixed short and long labels
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    fixed too long label
  • lines changed 270, context: html, text, full: html, text
    removing bad K562 data
  • lines changed 1, context: html, text, full: html, text
    moving over to release 5 html
• src/hg/makeDb/trackDb/human/hg19Patch9/description.html
  • lines changed 62, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/human/hg19Patch9/gap.html
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    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/human/hg19Patch9/gold.html
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    initial files from makeGenomeDb.pl
• src/hg/makeDb/trackDb/human/hg19Patch9/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    initial files from makeGenomeDb.pl
  • lines changed 30, context: html, text, full: html, text
    enable the ctgPos2, altSequence and testChainHg19 tracks
• src/hg/makeDb/trackDb/kangarooRat/dipOrd1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/kangarooRat/dipOrd1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
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    adjusting default track vis
• src/hg/makeDb/trackDb/latCha/latCha1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/latCha/latCha1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/makefile
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    adding hg19Patch9 to the build
  • lines changed 1, context: html, text, full: html, text
    not ready for papAnu1
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    Added papAnu2 to DBS.
• src/hg/makeDb/trackDb/manatee/triMan1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/manatee/triMan1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/megabat/pteVam1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/megabat/pteVam1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/megabat/pteVam1/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/moleRat/hetGla2/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/moleRat/hetGla2/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
  • lines changed 4291, context: html, text, full: html, text
    added in new cshl long mouse tracks
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrHistone.ra
  • lines changed 43, context: html, text, full: html, text
    change strain to Unknown for MEL cells
  • lines changed 6, context: html, text, full: html, text
    change strain to Unknown for MEL cell type
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
  • lines changed 7, context: html, text, full: html, text
    change strain to Unknown for MEL cells
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra
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    change strain to Unknown for MEL cells
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra
  • lines changed 8, context: html, text, full: html, text
    Fixed MEL strain to be Unknown rather than C57BL/6. Redmine #8435.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuRnaSeq.ra
  • lines changed 1131, context: html, text, full: html, text
    Adding 5 directional data sets to track. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 149, context: html, text, full: html, text
    Added Replicate 3 of the GATA1 Megakaryo data set and added V2 of pooled data that had to be reanalyzed.
  • lines changed 25, context: html, text, full: html, text
    Added md5sum's. Redmine #7516.
  • lines changed 38, context: html, text, full: html, text
    Fixed MEL strain to be Unknown rather than C57BL/6. Redmine #8435.
  • lines changed 241, context: html, text, full: html, text
    Added data from submission 7497. Redmine #7516.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 7, context: html, text, full: html, text
    Fixed objStatus message that referenced a placeholder experiment number.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    added in new cshl release 3 for mouse
  • lines changed 2, context: html, text, full: html, text
    forgot tags
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release3.ra
  • lines changed 1325, context: html, text, full: html, text
    added in new cshl release 3 for mouse
  • lines changed 938, context: html, text, full: html, text
    added in new cshl long mouse tracks
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra
  • lines changed 34, context: html, text, full: html, text
    Fixed tags starting with numbers in strain for PSU Track. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra
  • lines changed 13, context: html, text, full: html, text
    Fixed tags starting with numbers in strain for PSU Track. Redmine #107.
  • lines changed 298, context: html, text, full: html, text
    Adding 5 directional data sets to track. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.ra
  • lines changed 33, context: html, text, full: html, text
    Added Replicate 3 of the GATA1 Megakaryo data set and added V2 of pooled data that had to be reanalyzed.
  • lines changed 19, context: html, text, full: html, text
    Added data from submission 7497. Redmine #7516.
  • lines changed 30, context: html, text, full: html, text
    Fixed tags starting with numbers in strain for PSU Track. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.ra
  • lines changed 39, context: html, text, full: html, text
    fixed the error with BHLHE40c naming in subgroup and relevant stanza
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra
  • lines changed 44, context: html, text, full: html, text
    Fixed tag error that begin with number. Redmine #4468.
• src/hg/makeDb/trackDb/oreNil/oreNil2/gap.html
  • lines changed 62, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/oreNil/oreNil2/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pig/susScr3/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pig/susScr3/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pika/ochPri2/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pika/ochPri2/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/pika/ochPri2/trackDb.ra
  • lines changed 7, context: html, text, full: html, text
    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rat/trackDb.chainNet.ra
  • lines changed 4, context: html, text, full: html, text
    Finished rn5 vs rehMac3 chaninNet.
• src/hg/makeDb/trackDb/rhesus/rheMac3/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rhesus/rheMac3/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rhesus/trackDb.chainNet.ra
  • lines changed 8, context: html, text, full: html, text
    Finished LASTZ rheMac3 vs. rn5.
• src/hg/makeDb/trackDb/rockHyrax/proCap1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rockHyrax/proCap1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/rockHyrax/proCap1/trackDb.ra
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/saiBol/saiBol1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/saiBol/saiBol1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/shrew/sorAra1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/shrew/sorAra1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/shrew/sorAra1/trackDb.ra
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/sloth/choHof1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/sloth/choHof1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/sloth/choHof1/trackDb.ra
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    up to date page contents from makeGenomeDb.pl
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    setting default track visibilities
• src/hg/makeDb/trackDb/squirrel/speTri2/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/squirrel/speTri2/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/tarsier/tarSyr1/gap.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/tarsier/tarSyr1/gold.html
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/tarsier/tarSyr1/trackDb.ra
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    up to date page contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
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    Finished rn5 vs rehMac3 chaninNet.
• src/hg/makeDb/trackDb/treeShrew/tupBel1/gap.html
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    up to date contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/treeShrew/tupBel1/gold.html
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    up to date contents from makeGenomeDb.pl
• src/hg/makeDb/trackDb/treeShrew/tupBel1/trackDb.ra
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    minimal trackDb for gold gap pickup
• src/hg/protein/pbGlobal/pbGlobal.c
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    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/pslToBed/pslToBed.c
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    add some code to pslToBed to allow CDS to be back filled after a lift of the PSL file. This is for lifting genePred's between species. (#7045)
• src/hg/qaPushQ/qaPushQ.c
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    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/hg/sageVisCGI/sageVisCGI.c
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    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/hg/utils/automation/configFiles/papAnu1.config.ra
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    Remove papAnu1.config.ra.
• src/hg/utils/automation/configFiles/papAnu2.config.ra
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    Add papAnu2.config.ra for baboon papAnu2.
• src/hg/utils/automation/makeDownloads.pl
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    fixing hgsc.bcm.edu conditions for use URL
• src/hg/utils/tdbQuery/tdbQuery.c
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    Add ineLine option which helps combining tdbQuery with grep. Also add a space between 'for' and '('. Can this really be justified?
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    Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
• src/lib/cheapcgi.c
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    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/lib/common.c
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    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/lib/htmlPage.c
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    fixing so htmlCheck can tolerate the odd hidden variables outside of forms
• src/lib/htmshell.c
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    Another round of checkins as dictated by Jim. Required to add a space between 'for' and '('. Can this really be justified?
• src/product/ex.hg.conf
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    Add comments for each induvidual hgLogin parameter to match http://genomewiki.ucsc.edu/index.php/Enabling_hgLogin page.
• src/utils/qa/weeklybld/buildCgi32.csh
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    Build scripts have been updated to send various files to hgdownload-sd at the same time they are sent to hgdownload.
• src/utils/qa/weeklybld/buildEnv.csh
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    v271 preview1
• src/utils/qa/weeklybld/buildHgCentralSql.csh
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    Build scripts have been updated to send various files to hgdownload-sd at the same time they are sent to hgdownload.
• src/utils/qa/weeklybld/doHgDownloadUtils.csh
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    Build scripts have been updated to send various files to hgdownload-sd at the same time they are sent to hgdownload.
• src/utils/qa/weeklybld/doZip.csh
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    Build scripts have been updated to send various files to hgdownload-sd at the same time they are sent to hgdownload.
• src/utils/qa/weeklybld/makeUserApps.csh
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    Build scripts have been updated to send various files to hgdownload-sd at the same time they are sent to hgdownload.

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