Commits for angie
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v271_preview to v271_preview2 (2012-07-24 to 2012-07-31) v271
- Track #8360 (snp137): registering track handlers (late!).
- src/hg/hgTracks/simpleTracks.c - lines changed 4, context: html, text, full: html, text
- Doc #5088 (clean up trackDb/README): added documentation for variationtrack settings, including moving snpNNN into a new type. Technically
it is still bed 6 +, but I plan to make it a proper type so I can stop
hardcoding registerTrackHandler's. Also removed some hardcoded hostnames
in doc HREF's.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 241, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 220, context: html, text, full: html, text
- Typo fix for previous commit (#5088)
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 1, context: html, text, full: html, text
- Fixing stricter-gcc compiler warning 'format not a string literal and no format arguments' (cartWebStart needs a proper format string).
- src/hg/near/hgNear/hgNear.c - lines changed 4, context: html, text, full: html, text
- Track #8360 (snp137): regenerated snp137CodingDbSnp after finding that itwas omitting func code 43 (stop-loss) and many rows with 45 (cds-indel) that
also had NULL frame... although that may be a red flag for the cds-indel's.
I am waiting to hear back from dbSNP about some possible misuses of cds-indel.
- src/hg/inc/snp125CodingCoordless.h - lines changed 1, context: html, text, full: html, text
- src/hg/lib/snp125Coding.sql - lines changed 1, context: html, text, full: html, text
- src/hg/lib/snp125CodingCoordless.c - lines changed 1, context: html, text, full: html, text
- src/hg/lib/snp125CodingCoordless.sql - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/doc/hg19.txt - lines changed 15, context: html, text, full: html, text
- Feature #8551 (Sequence Ontology terms for predicted functional effects on SNP details pages):at Ensembl's request, instead of displaying dbSNP's predicted function terms, instead show
terms from the Sequence Ontology (SO). Where possible, terms from Ensembl's list at
http://staging.ensembl.org/info/docs/variation/predicted_data.html are used.
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 63, context: html, text, full: html, text
- src/hg/hgTracks/variation.c - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/snp137.shared.html - lines changed 110, context: html, text, full: html, text
- Fixing typo that broke compile.
- src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 1, context: html, text, full: html, text
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