File Changes for kent

v273_preview2 to v273_base (2012-09-11 to 2012-09-18) v273

• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    Tighting up spacing between button rows.
• src/kehayden/alphaChain/DYZ3.pairRdData.txt
  • lines changed 834, context: html, text, full: html, text
    Adding inputs to alphaChain from Y chromosome as a test set.
• src/kehayden/alphaChain/DYZ3_alphaChain_monOrder.txt
  • lines changed 34, context: html, text, full: html, text
    Adding inputs to alphaChain from Y chromosome as a test set.
• src/kehayden/alphaChain/alphaChain.c
  • lines changed 72, context: html, text, full: html, text
    Adding a bunch of debugging code. Preventing higher level counts on output from follang below the children's counts. Thinking about (but not yet implementing) change so ends of input lines are not put in a 2-mers and 1-mers when lines are 3 or more long.
  • lines changed 13, context: html, text, full: html, text
    Converting some debugging code into verbose logging statements.
  • lines changed 95, context: html, text, full: html, text
    Reworking command line and refactoring to add monomer classification info. Not yet implemented, just refactoring.
  • lines changed 58, context: html, text, full: html, text
    Loading in monomer order file.
  • lines changed 46, context: html, text, full: html, text
    Some refactoring. Making it so saves entire generated chain in memory so that can go back further than just last 3.
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    Refactoring - working towards making predictNext more general.
  • lines changed 122, context: html, text, full: html, text
    Making program look at the monomer order file to help it's predictions in case where it has nothing it can use in the markov chains.
  • lines changed 7, context: html, text, full: html, text
    Removing pairFile command line parameter since not yet using it. Improving usage message.
• src/kehayden/alphaChain/doIt
  • lines changed 2, context: html, text, full: html, text
    Removing pairFile command line parameter since not yet using it. Improving usage message.
• src/lib/dnautil.c
  • lines changed 1, context: html, text, full: html, text
    Adding a flag to prevent init from happening twice in dnaUtilOpen.