File Changes for max
switch to commits view, user indexv283_base to v284_preview (2013-05-07 to 2013-05-14) v284
- src/hg/hgTrackUi/hgTrackUi.c
- lines changed 11, context: html, text, full: html, text
new pubsBlat format allows to specify mouseover text and labels as part of primary table, without join. Also allows to define classes of papers and color them via a second table
- lines changed 15, context: html, text, full: html, text
adding publisher filter to pubs trackui
- lines changed 3, context: html, text, full: html, text
filters work on main table now if table is in new format, added publisher filter
- src/hg/hgTracks/bigBedTrack.c
- lines changed 1, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- lines changed 63, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- lines changed 2, context: html, text, full: html, text
temporarily taking back a change as it proved deadly for bed3 files
- lines changed 21, context: html, text, full: html, text
fixing a bug where a bed3 file crashed the mouseOver mapItem method. Moved this method now into the linkedFeatures code, where it should have been from the start
- src/hg/hgTracks/hgTracks.h
- lines changed 2, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- src/hg/hgTracks/makefile
- lines changed 1, context: html, text, full: html, text
moving the publication track code into its own .h/.c files
- src/hg/hgTracks/pubsTracks.c
- lines changed 485, context: html, text, full: html, text
moving the publication track code into its own .h/.c files
- lines changed 42, context: html, text, full: html, text
filters work on main table now if table is in new format, added publisher filter
- lines changed 5, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- lines changed 9, context: html, text, full: html, text
if impact coloring is activated, show impact factor in mouse over
- lines changed 2, context: html, text, full: html, text
forgot to init a variable
- lines changed 0, context: html, text, full: html, text
fixing a bug where a bed3 file crashed the mouseOver mapItem method. Moved this method now into the linkedFeatures code, where it should have been from the start
- src/hg/hgTracks/pubsTracks.h
- lines changed 7, context: html, text, full: html, text
moving the publication track code into its own .h/.c files
- src/hg/hgTracks/simpleTracks.c
- lines changed 123, context: html, text, full: html, text
new pubsBlat format allows to specify mouseover text and labels as part of primary table, without join. Also allows to define classes of papers and color them via a second table
- lines changed 22, context: html, text, full: html, text
trying to come up with better color shades for impact coloring
- lines changed 18, context: html, text, full: html, text
use only best color if several defined
- lines changed 1, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- lines changed 480, context: html, text, full: html, text
moving the publication track code into its own .h/.c files
- lines changed 17, context: html, text, full: html, text
fixing a bug where a bed3 file crashed the mouseOver mapItem method. Moved this method now into the linkedFeatures code, where it should have been from the start
- lines changed 26, context: html, text, full: html, text
last change broke hgGene links, temporarily taking it back
- lines changed 21, context: html, text, full: html, text
fixed linkedFeatures mouseOver text to work with hgGenes linkouts, tested on refseq, knownGenes, simple and extended bed files.
- src/hg/hgc/hgc.c
- lines changed 34, context: html, text, full: html, text
removed EXTRA_FIELDS_SUPPORT ifdef-blocks, as they made the code very hard to read, got OK from Tim by email
- lines changed 119, context: html, text, full: html, text
support for urls in bigBed+ fields via a new tdb statement "urls"
- lines changed 1, context: html, text, full: html, text
fixed one-off bug in disulf bind field
- src/hg/hgc/pubs.c
- lines changed 82, context: html, text, full: html, text
many changes after review by krauthammer lab to adapt display to yif OCR images
- lines changed 56, context: html, text, full: html, text
added link to image page on yif server, after email from mate
- lines changed 17, context: html, text, full: html, text
additional debug statements
- lines changed 37, context: html, text, full: html, text
handling explicitly specified publisher names, adding the missing nature logo
- lines changed 10, context: html, text, full: html, text
better html layout of publisher logo
- lines changed 27, context: html, text, full: html, text
making it possible to link to hgc without t and o parameters (europmc)
- lines changed 2, context: html, text, full: html, text
correcting weird case where file desc is empty
- lines changed 4, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- lines changed 2, context: html, text, full: html, text
bugfix for europmc who want to link to hgc directly
- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
- lines changed 25, context: html, text, full: html, text
first try at "urls" statement documentation
- lines changed 21, context: html, text, full: html, text
adding mouse over statement doc
- lines changed 7, context: html, text, full: html, text
fixed linkedFeatures mouseOver text to work with hgGenes linkouts, tested on refseq, knownGenes, simple and extended bed files.
- src/hg/htdocs/images/pubs_asm.png
- lines changed 0, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- src/hg/htdocs/images/pubs_elsevier.png
- lines changed 0, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- src/hg/htdocs/images/pubs_nature.png
- lines changed 0, context: html, text, full: html, text
handling explicitly specified publisher names, adding the missing nature logo
- src/hg/htdocs/images/pubs_npg.png
- lines changed 0, context: html, text, full: html, text
handling explicitly specified publisher names, adding the missing nature logo
- src/hg/htdocs/images/pubs_oup.png
- lines changed 0, context: html, text, full: html, text
adding oup image for pubs track
- src/hg/htdocs/images/pubs_oxfordjournals.png
- lines changed 0, context: html, text, full: html, text
adding oup image for pubs track
- src/hg/htdocs/images/pubs_pmc.png
- lines changed 0, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- src/hg/htdocs/images/pubs_pnas.png
- lines changed 0, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- src/hg/htdocs/images/pubs_wiley.png
- lines changed 0, context: html, text, full: html, text
fixed publisher filter and publisher logo bugs
- src/hg/makeDb/trackDb/human/lovd.html
- lines changed 66, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- src/hg/makeDb/trackDb/human/spMut.html
- lines changed 56, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- lines changed 6, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- lines changed 3, context: html, text, full: html, text
changes to html for spMut
- src/hg/makeDb/trackDb/human/trackDb.ra
- lines changed 20, context: html, text, full: html, text
support for urls in bigBed+ fields via a new tdb statement "urls"
- lines changed 11, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- lines changed 2, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 1, context: html, text, full: html, text
support for urls in bigBed+ fields via a new tdb statement "urls"
- lines changed 1, context: html, text, full: html, text
adding mouseOverField to trackDb for bigBed and using it for the spMut track
- src/hg/utils/lovd/bedDetail4.sql
- lines changed 16, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- src/hg/utils/lovd/check.sh
- lines changed 47, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- src/hg/utils/lovd/download.sh
- lines changed 24, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- src/hg/utils/lovd/load.sh
- lines changed 21, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- src/hg/utils/uniprotMutations/README.txt
- lines changed 30, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- lines changed 9, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- src/hg/utils/uniprotMutations/bed12UniProtAnnot.as
- lines changed 21, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- lines changed 1, context: html, text, full: html, text
fixed same table name in different .as files
- src/hg/utils/uniprotMutations/bed12UniProtMut.as
- lines changed 23, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- lines changed 2, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- src/hg/utils/uniprotMutations/liftUniprotMut.py
- lines changed 128, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- lines changed 2, context: html, text, full: html, text
remove empty strings from output in two fields
- lines changed 120, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- lines changed 3, context: html, text, full: html, text
keep mutations with disease but no other comment
- lines changed 33, context: html, text, full: html, text
changed format to take into account new uniprot parser output, using disease codes now in bed3 field
- src/hg/utils/uniprotMutations/load.sh
- lines changed 3, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- lines changed 5, context: html, text, full: html, text
uniprot variants track also can generate annotations now
- src/hg/utils/uniprotMutations/makeUniProtToHg.sh
- lines changed 48, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
- src/hg/utils/uniprotMutations/mapUniprot_doBlast
- lines changed 18, context: html, text, full: html, text
lovd and uniprot mutation tracks scripts
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