Commits for galt

v286_base to v287_preview (2013-07-09 to 2013-07-16) v287

• this has changes for 1.6 (except still need to add types IDAT,RCC,unknown)
  • src/hg/encode3/validateManifest/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 27, context: html, text, full: html, text
• adding types idat and rcc which just check for fileSize > 0
  • src/hg/encode3/validateManifest/validateManifest.c - lines changed 34, context: html, text, full: html, text
• fixing oops somebody made losing my changes.
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
• Fixing multi-threaded race condition in errAbort.c on pidInUse by adding another mutex.
  • src/lib/errabort.c - lines changed 44, context: html, text, full: html, text
• make sure that the rlimit out of memory errAbort still works
  • src/lib/errabort.c - lines changed 1, context: html, text, full: html, text
  • src/lib/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/lib/tests/testOutOfMem.c - lines changed 65, context: html, text, full: html, text
• After discussing with Angie, its probably OK to allow atexit cleanup
  • src/lib/errabort.c - lines changed 1, context: html, text, full: html, text
• Initial commit of new utility mysqlSecurityCheck which can be used to make sure that CGI mysql users do not have access to the mysql meta database where the mysql.user.password values must be protected from hacking.
  • src/hg/utils/mysqlSecurityCheck/makefile - lines changed 14, context: html, text, full: html, text
  • src/hg/utils/mysqlSecurityCheck/mysqlSecurityCheck.c - lines changed 254, context: html, text, full: html, text
• adding mysqlSecurityCheck to makefile
  • src/hg/utils/makefile - lines changed 2, context: html, text, full: html, text
• some little improvements to mysqlSecurityCheck output
  • src/hg/utils/mysqlSecurityCheck/mysqlSecurityCheck.c - lines changed 5, context: html, text, full: html, text