All File Changes

v287_base to v288_preview (2013-07-30 to 2013-08-07) v288

• src/hg/encode/getTrackReferences/getTrackReferences
  • lines changed 4, context: html, text, full: html, text
    Added --verbose option to print full authors list, refs #11448
• src/hg/hgVai/hgVai.c
  • lines changed 1, context: html, text, full: html, text
    Tweak for assemblies that do not have SNPs tracks.
• src/hg/lib/annoStreamDb.c
  • lines changed 1, context: html, text, full: html, text
    annoStreamDb needed a little tweak to work on scaffoldish assemblies for which we still use asdDoQuerySimple.
  • lines changed 15, context: html, text, full: html, text
    Special case for tables that are incrementally updated (currentlyjust GenBank tables): we need to sort them.
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    Added gadMor1 to ensGeneWgs group per code review (redmine #11413)
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 46, context: html, text, full: html, text
    Adding snp138 trackDb entries.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 9, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeSuper.html
  • lines changed 10, context: html, text, full: html, text
    Removed V12 and V10 from the Gencode supertrack list, since they're no longer displayed refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.ra
  • lines changed 227, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV10.release3.ra
  • lines changed 227, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.ra
  • lines changed 227, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.release3.ra
  • lines changed 227, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV12.release4.ra
  • lines changed 227, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.ra
  • lines changed 7, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV14.release2.ra
  • lines changed 264, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV17.html
  • lines changed 1, context: html, text, full: html, text
    Changed redirected link to direct, refs #11415
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra
  • lines changed 223, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.release3.ra
  • lines changed 223, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.release4.ra
  • lines changed 223, context: html, text, full: html, text
    Reduced number of default pack gencode tracks on beta/RR, collapsed some threestatetrackdb entries refs #11074
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 44, context: html, text, full: html, text
    Adding snp138 trackDb entries.
• src/userApps/Makefile
  • lines changed 1, context: html, text, full: html, text
    correct error exit on a simple 'make' before fetchSource refs #9149
• src/utils/qa/qaEnsGenes.csh
  • lines changed 4, context: html, text, full: html, text
    Fixed so featureBits would run on hgwbeta
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v288 preview1
• src/utils/qa/weeklybld/buildGitReports.csh
  • lines changed 3, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/buildZip.csh
  • lines changed 6, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/doHgDownloadUtils.csh
  • lines changed 7, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/doNewBranch.csh
  • lines changed 3, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/doZip.csh
  • lines changed 4, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/makeUserApps.csh
  • lines changed 8, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/makeZip.csh
  • lines changed 5, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev
• src/utils/qa/weeklybld/tagBeta.csh
  • lines changed 4, context: html, text, full: html, text
    changes to support doing the build wrap-up on hgwdev

• lines changed: 2254
• files changed: 31