Commits for kate

v295_base to v296_preview (2014-02-03 to 2014-02-10) v296

• Support multiple canonical motifs for a TF. Also simplify hgc code for motifs. refs #9092
  • src/hg/hgTracks/factorSource.c - lines changed 20, context: html, text, full: html, text
  • src/hg/hgc/peakClusters.c - lines changed 100, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 1, context: html, text, full: html, text
• Merge branch
  • src/hg/hgTracks/factorSource.c - lines changed 3, context: html, text, full: html, text
• Comment as requested in code review
  • src/hg/hgTracks/factorSource.c - lines changed 1, context: html, text, full: html, text
• Merge branch
  • src/hg/hgc/hgc.c - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• Fix problem with missing Description section (occured when factor is missing from motifTarget table. refs #9092
  • src/hg/hgc/peakClusters.c - lines changed 4, context: html, text, full: html, text
• Add missing TF factors to filter. refs #12551
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.ra - lines changed 32, context: html, text, full: html, text
• Clarifications and minor additions to TF ChIP V4 track description after review by ZLab (Zhiping Weng). refs #12551
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTfbsClusteredV3.html - lines changed 25, context: html, text, full: html, text
• Linked tables for TF ChIP V4 track. refs #12551
  • src/hg/makeDb/schema/all.joiner - lines changed 16, context: html, text, full: html, text
• Remove direction arrows in dense mode. Agreeing with Brian's suggest during code review that it's busy and problematic if overlaps are on both directions. refs #9092
  • src/hg/hgTracks/factorSource.c - lines changed 1, context: html, text, full: html, text
• Additional settings for motifs in factorSource tracks. refs #9092
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html - lines changed 6, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 4, context: html, text, full: html, text
• Schema for TF to motif table (e.g. factorbookMotifTarget). refs #9092
  • src/hg/lib/factorMotifs.as - lines changed 6, context: html, text, full: html, text
• Changes from code review.
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/factorSource.c - lines changed 2, context: html, text, full: html, text