File Changes for angie
switch to commits view, user indexv304_preview to v304_preview2 (2014-07-28 to 2014-08-04) v304
- src/hg/hgGenome/import.c
- lines changed 1, context: html, text, full: html, text
Ugh, forgot to remove external dependencies on jsWriteFunctions in b7b15a261.
- src/hg/hgGenome/mainPage.c
- lines changed 2, context: html, text, full: html, text
Ugh, forgot to remove external dependencies on jsWriteFunctions in b7b15a261.
- src/hg/hgTables/mainPage.c
- lines changed 1, context: html, text, full: html, text
Ugh, forgot to remove external dependencies on jsWriteFunctions in b7b15a261.
- src/hg/hgTracks/variation.c
- lines changed 2, context: html, text, full: html, text
When showing SNPs' alleles on the reference genome + strand, if the userclicks "reverse" (revCmplDisp) show them on the - strand like other
base displays (Base Position track, pgSnp/VCF, multiz). refs #13694
- src/hg/hgVai/hgVai.c
- lines changed 4, context: html, text, full: html, text
Added jsMakeSetClearContainer / jsEndContainer to jsHelper.c, and apppliedthem to a couple long lists of checkboxes in hgVai. While at it, I moved
jsHelper.c's javascript-inlined-in-HTML out to a new .js file, jsHelper.js.
- src/hg/hgc/vcfClick.c
- lines changed 4, context: html, text, full: html, text
David pointed out how confusing it is to see the 'Haplotype sorting order' optionto change the central variant, when haplotype clustering is disabled. So don't
show the option unless haplotype clustering is enabled.
- lines changed 10, context: html, text, full: html, text
David pointed out that it is inappropriate to show Hardy-Weinberg equilibriumfrequencies on the VCF details page unless the VCF data are from a population
study -- so at this point, pretty much only 1000 Genomes. So I added a new
trackDb setting for vcf/vcfTabix, showHardyWeinberg, and added it to the
1000 Genomes track def.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbDoc.html
- lines changed 26, context: html, text, full: html, text
Documentation of new trackDb settings for initial config of VCF tracks.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbHub.html
- lines changed 26, context: html, text, full: html, text
Documentation of new trackDb settings for initial config of VCF tracks.
- src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml
- lines changed 68, context: html, text, full: html, text
Documentation of new trackDb settings for initial config of VCF tracks.
- src/hg/htdocs/goldenPath/help/vcf.html
- lines changed 14, context: html, text, full: html, text
Documentation of new trackDb settings for initial config of VCF tracks.
- src/hg/inc/jsHelper.h
- lines changed 11, context: html, text, full: html, text
Removed unused function jsMakeSetClearButton (which should remain unused -- it does a form submit!).
- lines changed 7, context: html, text, full: html, text
Added jsMakeSetClearContainer / jsEndContainer to jsHelper.c, and apppliedthem to a couple long lists of checkboxes in hgVai. While at it, I moved
jsHelper.c's javascript-inlined-in-HTML out to a new .js file, jsHelper.js.
- lines changed 5, context: html, text, full: html, text
Ugh, forgot to remove external dependencies on jsWriteFunctions in b7b15a261.
- src/hg/inc/vcfUi.h
- lines changed 2, context: html, text, full: html, text
David pointed out that it is inappropriate to show Hardy-Weinberg equilibriumfrequencies on the VCF details page unless the VCF data are from a population
study -- so at this point, pretty much only 1000 Genomes. So I added a new
trackDb setting for vcf/vcfTabix, showHardyWeinberg, and added it to the
1000 Genomes track def.
- src/hg/js/jsHelper.js
- lines changed 121, context: html, text, full: html, text
Added jsMakeSetClearContainer / jsEndContainer to jsHelper.c, and apppliedthem to a couple long lists of checkboxes in hgVai. While at it, I moved
jsHelper.c's javascript-inlined-in-HTML out to a new .js file, jsHelper.js.
- lines changed 4, context: html, text, full: html, text
Oops, left in some console.log calls in jsHelper.js -- removing them.
- src/hg/js/makefile
- src/hg/lib/jsHelper.c
- lines changed 42, context: html, text, full: html, text
Removed unused function jsMakeSetClearButton (which should remain unused -- it does a form submit!).
- lines changed 120, context: html, text, full: html, text
Added jsMakeSetClearContainer / jsEndContainer to jsHelper.c, and apppliedthem to a couple long lists of checkboxes in hgVai. While at it, I moved
jsHelper.c's javascript-inlined-in-HTML out to a new .js file, jsHelper.js.
- lines changed 2, context: html, text, full: html, text
Ugh, forgot to remove external dependencies on jsWriteFunctions in b7b15a261.
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra
- lines changed 1, context: html, text, full: html, text
David pointed out that it is inappropriate to show Hardy-Weinberg equilibriumfrequencies on the VCF details page unless the VCF data are from a population
study -- so at this point, pretty much only 1000 Genomes. So I added a new
trackDb setting for vcf/vcfTabix, showHardyWeinberg, and added it to the
1000 Genomes track def.
- src/hg/makeDb/trackDb/tagTypes.tab
- lines changed 9, context: html, text, full: html, text
David pointed out that it is inappropriate to show Hardy-Weinberg equilibriumfrequencies on the VCF details page unless the VCF data are from a population
study -- so at this point, pretty much only 1000 Genomes. So I added a new
trackDb setting for vcf/vcfTabix, showHardyWeinberg, and added it to the
1000 Genomes track def.
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