File Changes for braney

v306_preview to v306_preview2 (2014-09-08 to 2014-09-15) v306

• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 73, context: html, text, full: html, text
    fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
    
• src/hg/hgc/hgc.c
  • lines changed 3, context: html, text, full: html, text
    fix crash in output of predicted mRNA from geneid track #13861
• src/hg/inc/hubConnect.h
  • lines changed 4, context: html, text, full: html, text
    fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
    
• src/hg/inc/trackHub.h
  • lines changed 1, context: html, text, full: html, text
    fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
    
• src/hg/lib/bigGenePred.c
  • lines changed 5, context: html, text, full: html, text
    get genePredToBigGenePred to work with simple genePred
  • lines changed 4, context: html, text, full: html, text
    add exonFrames to genePreds that don't have them. #13861
• src/hg/lib/customFactory.c
  • lines changed 1, context: html, text, full: html, text
    strip tabs out of custom track descriptions because they confuse thejavaScript #13976
    
• src/hg/lib/hubConnect.c
  • lines changed 11, context: html, text, full: html, text
    fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
    
• src/hg/lib/trackHub.c
  • lines changed 1, context: html, text, full: html, text
    fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
    
• src/hg/makeDb/doc/eboVir2/genePred.txt
  • lines changed 9, context: html, text, full: html, text
    some doc for genes on eboVir2
• src/hg/makeDb/genbank/src/ccds/createKeys.sql
  • lines changed 28, context: html, text, full: html, text
    CCDS changed their table schemas again
• src/hg/makeDb/genbank/src/ccds/createTables.sql
  • lines changed 118, context: html, text, full: html, text
    CCDS changed their table schemas again
• src/hg/makeDb/genbank/src/ccds/ncbiSql/convertCreateTables
  • lines changed 1, context: html, text, full: html, text
    CCDS changed their table schemas again
• src/hg/makeDb/genbank/src/ccds/ncbiSql/createKeys.sql
  • lines changed 217, context: html, text, full: html, text
    CCDS changed their table schemas again
• src/hg/makeDb/genbank/src/ccds/ncbiSql/createTables.sql
  • lines changed 132, context: html, text, full: html, text
    CCDS changed their table schemas again
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49way.ra
  • lines changed 1, context: html, text, full: html, text
    add frames to the multiz49way table in eboVir2
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49wayStrainNames.ra
  • lines changed 1, context: html, text, full: html, text
    changes to make multiz use frames and VCF track name tweak
• src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    add ncbiGene track to eboVir2 NC_002549
  • lines changed 1, context: html, text, full: html, text
    some doc for genes on eboVir2
  • lines changed 8, context: html, text, full: html, text
    remove Hiram's gene prediction track from eboVir2
  • lines changed 1, context: html, text, full: html, text
    changes to make multiz use frames and VCF track name tweak
• src/hg/txGene/txGeneAccession/txGeneAccession.c
  • lines changed 1, context: html, text, full: html, text
    increase the size of a buffer that holds the id name
• src/hg/utils/genePredToBigGenePred/genePredToBigGenePred.c
  • lines changed 2, context: html, text, full: html, text
    get genePredToBigGenePred to work with simple genePred
  • lines changed 5, context: html, text, full: html, text
    add exonFrames to genePreds that don't have them. #13861
• src/hg/utils/gff3ToGenePred/gff3ToGenePred.c
  • lines changed 2, context: html, text, full: html, text
    some tweaks to support the Ebola skunk project
  • lines changed 1, context: html, text, full: html, text
    oops...
• src/hg/utils/gff3ToGenePred/tests/expected/errCases1Test.out
  • lines changed 6, context: html, text, full: html, text
    some tweaks to support the Ebola skunk project
• src/lib/gff3.c
  • lines changed 2, context: html, text, full: html, text
    some tweaks to support the Ebola skunk project