Commits for braney

v306_preview to v306_preview2 (2014-09-08 to 2014-09-15) v306

• get genePredToBigGenePred to work with simple genePred
  • src/hg/lib/bigGenePred.c - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/genePredToBigGenePred/genePredToBigGenePred.c - lines changed 2, context: html, text, full: html, text
• CCDS changed their table schemas again
  • src/hg/makeDb/genbank/src/ccds/createKeys.sql - lines changed 28, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/ccds/createTables.sql - lines changed 118, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/ccds/ncbiSql/convertCreateTables - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/ccds/ncbiSql/createKeys.sql - lines changed 217, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/ccds/ncbiSql/createTables.sql - lines changed 132, context: html, text, full: html, text
• strip tabs out of custom track descriptions because they confuse thejavaScript #13976
  
  • src/hg/lib/customFactory.c - lines changed 1, context: html, text, full: html, text
• fix crash in output of predicted mRNA from geneid track #13861
  • src/hg/hgc/hgc.c - lines changed 3, context: html, text, full: html, text
• add exonFrames to genePreds that don't have them. #13861
  • src/hg/lib/bigGenePred.c - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/genePredToBigGenePred/genePredToBigGenePred.c - lines changed 5, context: html, text, full: html, text
• increase the size of a buffer that holds the id name
  • src/hg/txGene/txGeneAccession/txGeneAccession.c - lines changed 1, context: html, text, full: html, text
• fix hgHubConnect to deal with bad hubs less confusing by staying inhgHubConnect if connecting to the hub fails. #13992
  
  • src/hg/hgHubConnect/hgHubConnect.c - lines changed 73, context: html, text, full: html, text
  • src/hg/inc/hubConnect.h - lines changed 4, context: html, text, full: html, text
  • src/hg/inc/trackHub.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hubConnect.c - lines changed 11, context: html, text, full: html, text
  • src/hg/lib/trackHub.c - lines changed 1, context: html, text, full: html, text
• add ncbiGene track to eboVir2 NC_002549
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 10, context: html, text, full: html, text
• add frames to the multiz49way table in eboVir2
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49way.ra - lines changed 1, context: html, text, full: html, text
• some doc for genes on eboVir2
  • src/hg/makeDb/doc/eboVir2/genePred.txt - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text
• some tweaks to support the Ebola skunk project
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/gff3ToGenePred/tests/expected/errCases1Test.out - lines changed 6, context: html, text, full: html, text
  • src/lib/gff3.c - lines changed 2, context: html, text, full: html, text
• oops...
  • src/hg/utils/gff3ToGenePred/gff3ToGenePred.c - lines changed 1, context: html, text, full: html, text
• remove Hiram's gene prediction track from eboVir2
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• changes to make multiz use frames and VCF track name tweak
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.49wayStrainNames.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/ebola/eboVir2/trackDb.ra - lines changed 1, context: html, text, full: html, text