File Changes for braney

v306_base to v307_preview (2014-09-22 to 2014-09-29) v307

• src/hg/hgTracks/wigMafTrack.c
  • lines changed 128, context: html, text, full: html, text
    add maf SNP view to maf display
• src/hg/inc/mafGene.h
  • lines changed 1, context: html, text, full: html, text
    add a mode to mafGene that let's it put out a unique character for eachcodon.
    
• src/hg/lib/mafGene.c
  • lines changed 9, context: html, text, full: html, text
    add a mode to mafGene that let's it put out a unique character for eachcodon.
    
• src/hg/makeDb/doc/eboVir3/snpView.txt
  • lines changed 33, context: html, text, full: html, text
    add some doc about how to build the mafSnp track for eboVir3
  • lines changed 14, context: html, text, full: html, text
    deal with both eboVir2 maf's. Add UTR change annotation.
• src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
  • lines changed 58, context: html, text, full: html, text
    some doc that mentions the mafSnp mode
• src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.160way.ra
  • lines changed 2, context: html, text, full: html, text
    trackDb modifications to support mafSnp mode on eboVir3
• src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.strainName160way.ra
  • lines changed 1, context: html, text, full: html, text
    add snpTable mode to ebola 160 way
  • lines changed 2, context: html, text, full: html, text
    trackDb modifications to support mafSnp mode on eboVir3
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 1, context: html, text, full: html, text
    add snpTable mode to ebola 160 way
• src/hg/ratStuff/mafGene/mafGene.c
  • lines changed 6, context: html, text, full: html, text
    add a mode to mafGene that let's it put out a unique character for eachcodon.
    
• src/hg/ratStuff/mafToSnpBed/mafToSnpBed.c
  • lines changed 165, context: html, text, full: html, text
    add mafToSnpBed tool that takes a maf and outputs a bed with someinformation about the functional region that the SNPS fall into.
    
  • lines changed 20, context: html, text, full: html, text
    polish mafToSnpBed ... remove some unneccesary stuff
• src/hg/ratStuff/mafToSnpBed/makefile
  • lines changed 3, context: html, text, full: html, text
    add mafToSnpBed tool that takes a maf and outputs a bed with someinformation about the functional region that the SNPS fall into.
    
• src/inc/dnautil.h
  • lines changed 2, context: html, text, full: html, text
    add a mode to mafGene that let's it put out a unique character for eachcodon.
    
• src/lib/dnautil.c
  • lines changed 104, context: html, text, full: html, text
    add a mode to mafGene that let's it put out a unique character for eachcodon.