Commits for braney
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v306_base to v307_preview (2014-09-22 to 2014-09-29) v307
- add maf SNP view to maf display
- src/hg/hgTracks/wigMafTrack.c - lines changed 128, context: html, text, full: html, text
- add snpTable mode to ebola 160 way
- src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.strainName160way.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
- add a mode to mafGene that let's it put out a unique character for eachcodon.
- src/hg/ratStuff/mafGene/mafGene.c - lines changed 6, context: html, text, full: html, text
- add some doc about how to build the mafSnp track for eboVir3
- src/hg/makeDb/doc/eboVir3/snpView.txt - lines changed 33, context: html, text, full: html, text
- trackDb modifications to support mafSnp mode on eboVir3
- src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.160way.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.strainName160way.ra - lines changed 2, context: html, text, full: html, text
- add mafToSnpBed tool that takes a maf and outputs a bed with someinformation about the functional region that the SNPS fall into.
- src/hg/ratStuff/mafToSnpBed/mafToSnpBed.c - lines changed 165, context: html, text, full: html, text
- src/hg/ratStuff/mafToSnpBed/makefile - lines changed 3, context: html, text, full: html, text
- deal with both eboVir2 maf's. Add UTR change annotation.
- src/hg/makeDb/doc/eboVir3/snpView.txt - lines changed 14, context: html, text, full: html, text
- some doc that mentions the mafSnp mode
- src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html - lines changed 58, context: html, text, full: html, text
- polish mafToSnpBed ... remove some unneccesary stuff
- src/hg/ratStuff/mafToSnpBed/mafToSnpBed.c - lines changed 20, context: html, text, full: html, text
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