All File Changes
v308_preview to v308_preview2 (2014-10-20 to 2014-10-27) v308
- src/browserbox/root/updateBrowser.sh
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removing -u option from hgdownload rsync, refs #14121, note 69
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showing the help message after an update. refs #14121,
- src/hg/encode/getTrackReferences/getTrackReferences
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Adding trailing slash to pmc urls so the redirect detector doesn't complain
- src/hg/hgLiftOver/hgLiftOver.c
- lines changed 1, context: html, text, full: html, text
adding links to the store!
- src/hg/hgMirror/hgMirror
- lines changed 9, context: html, text, full: html, text
fixing error where non-functional hgdownload server leads to weird errormessage, refs #14121 note 51
- src/hg/htdocs/FAQ/FAQblat.html
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Hiram created 2 new programs for pslScore. I am editing the FAQ correspondingly.
- src/hg/htdocs/admin/mirror.html
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adding links to the store!
- src/hg/htdocs/goldenPath/help/gbib.html
- lines changed 249, context: html, text, full: html, text
More edits. Still need to do some more, but committing these for ASHG tutorial.
- src/hg/htdocs/goldenPath/help/hgVaiHelpText.html
- lines changed 7, context: html, text, full: html, text
fixed linked to Ensembl's VEP
- src/hg/htdocs/goldenPath/newsarch.html
- lines changed 47, context: html, text, full: html, text
Adding announcement for snp141 tracks, refs #13309
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Adding missing line below snp141 announcement
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fixing typo in dbSNP announcement: assembies to assemblies
- src/hg/htdocs/goldenPath/pubs.html
- lines changed 19, context: html, text, full: html, text
Added pubs by Dent and Ngan.
- src/hg/htdocs/inc/globalNavBar.inc
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Adding menu bar link to browser store
- src/hg/htdocs/indexNews.html
- lines changed 96, context: html, text, full: html, text
Adding announcement for snp141 tracks, refs #13309
- lines changed 2, context: html, text, full: html, text
fixing typo in dbSNP announcement: assembies to assemblies
- src/hg/htdocs/license/index.html
- lines changed 5, context: html, text, full: html, text
adding links to the store!
- src/hg/htdocs/mirror.html
- lines changed 2, context: html, text, full: html, text
adding links to the store!
- src/hg/lib/hdb.c
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small comment change for gbib
- src/hg/makeDb/doc/bosTau6.txt
- lines changed 13, context: html, text, full: html, text
Added liftOvers to bosTau8; refs #13852
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Added bosTau8 -> bosTau6/7 liftOvers; made minor corrections to bosTau6/7 make docs; refs #13852
- src/hg/makeDb/doc/bosTau7.txt
- lines changed 14, context: html, text, full: html, text
Added liftOvers to bosTau8; refs #13852
- lines changed 4, context: html, text, full: html, text
Added bosTau8 -> bosTau6/7 liftOvers; made minor corrections to bosTau6/7 make docs; refs #13852
- src/hg/makeDb/doc/bosTau8.txt
- lines changed 1, context: html, text, full: html, text
Fixed section header; refs #13852
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adding ucscToINSDC track refs #13852
- lines changed 58, context: html, text, full: html, text
Added bosTau8 -> bosTau6/7 liftOvers; made minor corrections to bosTau6/7 make docs; refs #13852
- lines changed 77, context: html, text, full: html, text
Added bosTau8 -> bosTau6/7 liftOvers; made minor corrections to bosTau6/7 make docs; refs #13852
- src/hg/makeDb/doc/dm6.txt
- lines changed 87, context: html, text, full: html, text
add cytoBand construction refs #4049
- src/hg/makeDb/doc/eboVir3/ordinaryTracks.txt
- lines changed 1, context: html, text, full: html, text
reset default position to include the whole sequence refs #14011
- src/hg/makeDb/doc/eboVir3/phastCons160way.txt
- lines changed 52, context: html, text, full: html, text
adding downloads for 160-way phastCons and phyloP refs #14011
- src/hg/makeDb/doc/hg38.txt
- src/hg/makeDb/genbank/etc/dbload
- lines changed 4, context: html, text, full: html, text
push the maxHours option to a higher level so we can do full or partialloads via the crontab
- src/hg/makeDb/schema/all.joiner
- lines changed 1, context: html, text, full: html, text
Added bosTau8 and hg38 to non-self chain section; alphabetized section; refs #13852
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a few outstanding edits for bosTau8 refs #13852
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a few outstanding edits for bosTau8 refs #13852
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changed minCheck for wgEncodeGencodeExonSupportVM3.transcriptId
- src/hg/makeDb/trackDb/ebola/eboVir3/trackDb.ra
- lines changed 1, context: html, text, full: html, text
moving muPIT to gene group refs #10411
- src/hg/makeDb/trackDb/human/hg38/trackDb.wgEncode.ra
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.html
- src/hg/makeDb/trackDb/human/hg38/wgEncodeGencodeV21.ra
- src/hg/makeDb/trackDb/makefile
- lines changed 8, context: html, text, full: html, text
no more cv.ra copying refs #14207
- src/hg/pslSort/pslSort.c
- lines changed 9, context: html, text, full: html, text
make pslSort accept a single file
- src/utils/pslScore/pslScore.pl
- lines changed 43, context: html, text, full: html, text
remove useless reproduction of C code comments refs #14011
- src/utils/qa/weeklybld/boxRelease.csh
- lines changed 62, context: html, text, full: html, text
giving the buildmeister two scripts to release the box, refs #13049
- src/utils/qa/weeklybld/buildEnv.csh
- lines changed 2, context: html, text, full: html, text
v308 preview2 refs #14194
- src/utils/qa/weeklybld/buildGbibAndZip
- lines changed 40, context: html, text, full: html, text
giving the buildmeister two scripts to release the box, refs #13049
- lines changed: 1907
- files changed: 48