File Changes for kent
switch to commits view, user indexv309_preview to v309_preview2 (2014-11-10 to 2014-11-17) v309
- src/hg/cirm/quakeLab/djangoModelToAs/djangoModelToAs.c
- lines changed 132, context: html, text, full: html, text
Cut of something to convert the django models from Quake lab to .as files.
- src/hg/cirm/quakeLab/djangoModels/cellcapturemodels.py
- lines changed 266, context: html, text, full: html, text
Draft Django data models from Ben Passarelli.
- lines changed 266, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/quantifymodels.py
- lines changed 45, context: html, text, full: html, text
Draft Django data models from Ben Passarelli.
- lines changed 45, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/sequencemodels.py
- lines changed 144, context: html, text, full: html, text
Draft Django data models from Ben Passarelli.
- lines changed 144, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/take1/cellcapturemodels.py
- lines changed 266, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/take1/quantifymodels.py
- lines changed 45, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/take1/sequencemodels.py
- lines changed 144, context: html, text, full: html, text
Second cut, this time all in one file.
- src/hg/cirm/quakeLab/djangoModels/take2/models.py
- lines changed 324, context: html, text, full: html, text
Second cut, this time all in one file.
- lines changed 2, context: html, text, full: html, text
Fixing misplaced newline.
- src/hg/encode3/encodeDataWarehouse/edwMakeValidFile/sorted.bb
- lines changed 0, context: html, text, full: html, text
Deleting out of place binary file
- src/hg/genoPheno/fakeData/smallGeno.tab
- lines changed 556, context: html, text, full: html, text
Removing more unused old cruft.
- src/hg/genoPheno/gpFakeData/gpFakeData.c
- lines changed 419, context: html, text, full: html, text
Removing more unused old cruft.
- src/hg/genoPheno/gpFakeData/makefile
- lines changed 14, context: html, text, full: html, text
Removing more unused old cruft.
- src/hg/genoPheno/gpShuffleData/gpShuffleData.c
- lines changed 159, context: html, text, full: html, text
Removing old function that would be considered one shot these days.
- src/hg/genoPheno/gpShuffleData/makefile
- lines changed 14, context: html, text, full: html, text
Removing old function that would be considered one shot these days.
- src/hg/hgTables/genomeSpace.c
- lines changed 21, context: html, text, full: html, text
Replaced md5hash function with equivalent call to md5ForFile library function.
- src/hg/hgc/hgdpClick.c
- lines changed 6, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/hg/lib/hgFind.c
- lines changed 1, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/hg/makeDb/hgLoadPsl/hgLoadPsl.c
- lines changed 8, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/hg/makeDb/outside/uwDnaseTrackHub/uwDnaseTrackHub.c
- lines changed 36, context: html, text, full: html, text
Fixing up sort order and adding treatment subgroup.
- src/hg/oneShot/freen/freen.c
- lines changed 56, context: html, text, full: html, text
Testing pthreadDoList example usage code.
- lines changed 39, context: html, text, full: html, text
Replacing old md5 module with one that follows same interface (except for some things noone used) but that is implemented by calling the md5sum program in a pipe. For large files this is about 40% faster, and for small things it just adds a couple of milliseconds. Also this gets rid of the only piece of GPL licensed code in the tree, which makes the intellecual property easier to manage.
- src/hg/pslPartition/pslPartition.c
- lines changed 2, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/inc/md5.h
- lines changed 24, context: html, text, full: html, text
Replacing old md5 module with one that follows same interface (except for some things noone used) but that is implemented by calling the md5sum program in a pipe. For large files this is about 40% faster, and for small things it just adds a couple of milliseconds. Also this gets rid of the only piece of GPL licensed code in the tree, which makes the intellecual property easier to manage.
- src/inc/pipeline.h
- lines changed 8, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/inc/synQueue.h
- lines changed 4, context: html, text, full: html, text
Adding synQueuePutUnprotected, a minor optimization.
- src/inc/trix.h
- lines changed 3, context: html, text, full: html, text
Adding trixSearchCmp function to header file and fixed documentation.
- src/lib/linefile.c
- lines changed 2, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/lib/mailViaPipe.c
- lines changed 4, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/lib/md5.c
- lines changed 338, context: html, text, full: html, text
Replacing old md5 module with one that follows same interface (except for some things noone used) but that is implemented by calling the md5sum program in a pipe. For large files this is about 40% faster, and for small things it just adds a couple of milliseconds. Also this gets rid of the only piece of GPL licensed code in the tree, which makes the intellecual property easier to manage.
- src/lib/pipeline.c
- lines changed 14, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/lib/pthreadDoList.c
- src/lib/synQueue.c
- lines changed 7, context: html, text, full: html, text
Adding synQueuePutUnprotected, a minor optimization.
- src/lib/textOut.c
- lines changed 2, context: html, text, full: html, text
Adding new pipelineClose() function that combines pipelineWait and pipelineFree and applying it where it makes sense, in some cases fixing non-symptomatic bugs from missing pipelineWaits
- src/lib/trix.c
- lines changed 1, context: html, text, full: html, text
Adding trixSearchCmp function to header file and fixed documentation.
- src/parasol/broadHub/broadHub.c
- lines changed 750, context: html, text, full: html, text
Removing more unused old cruft.
- src/parasol/broadHub/makefile
- lines changed 14, context: html, text, full: html, text
Removing more unused old cruft.
- src/parasol/broadNode/broadNode.c
- lines changed 473, context: html, text, full: html, text
Removing more unused old cruft.
- src/parasol/broadNode/makefile
- lines changed 14, context: html, text, full: html, text
Removing more unused old cruft.
- src/parasol/broadNodeStart/broadNodeStart.c
- lines changed 54, context: html, text, full: html, text
Removing more unused old cruft.
- src/parasol/broadNodeStart/makefile
- lines changed 14, context: html, text, full: html, text
Removing more unused old cruft.
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