All File Changes

v320_preview2 to v320_base (2015-07-27 to 2015-08-03) v320

• src/gfClient/gfClient.c
  • lines changed 1, context: html, text, full: html, text
    fixing typo in help msg for gfClient
    
• src/hg/hgMenubar/hgMenubar.c
  • lines changed 13, context: html, text, full: html, text
    Some fixes for the 404 etc. menu bars, refs #15755
    
• src/hg/htdocs/admin/403.html
  • lines changed 1, context: html, text, full: html, text
    Some fixes for the 404 etc. menu bars, refs #15755
    
• src/hg/htdocs/admin/404.html
  • lines changed 1, context: html, text, full: html, text
    Some fixes for the 404 etc. menu bars, refs #15755
    
• src/hg/htdocs/admin/500.html
  • lines changed 1, context: html, text, full: html, text
    Some fixes for the 404 etc. menu bars, refs #15755
    
• src/hg/htdocs/goldenPath/help/vcf.html
  • lines changed 6, context: html, text, full: html, text
    changed vcf custom track example to put browser line right there with the track line, so you get to some data right away. too easy not to catch the browser position line that comes later and then not see any data
    
• src/hg/htdocs/training/index.html
  • lines changed 11, context: html, text, full: html, text
    dropped completed workshops from list
    
  • lines changed 1, context: html, text, full: html, text
    removing ' ' because I cannott figure out why I thought they were necessary. refs #15772
    
• src/hg/htdocs/training/trainingMap.html
  • lines changed 0, context: html, text, full: html, text
    dropped completed workshops from list
    
  • lines changed 1, context: html, text, full: html, text
    dropping nbsp in front of map. it wraps to a blank line if your window is a bit narrow and does not serve the initial intent of moving the map off the left margin
    
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v320
    
• src/hg/lib/cartJson.c
  • lines changed 20, context: html, text, full: html, text
    In groupedTrackDb, sort views alphabetically and subtracks by priority / shortLabel.
    
• src/hg/makeDb/doc/canFam3.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/ce11/multiz26way.txt
  • lines changed 1788, context: html, text, full: html, text
    initial alignment completed refs #15209
    
• src/hg/makeDb/doc/equCab2.txt
  • lines changed 20, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/eriEur2.txt
  • lines changed 42, context: html, text, full: html, text
    loading sgpGene and geneid refs #15616 #13214
    
• src/hg/makeDb/doc/felCat5.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/gorGor3.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/hg18.txt
  • lines changed 13, context: html, text, full: html, text
    Updated DGV for hg18, hg19, hg38.
    refs #15767
    
  • lines changed 1, context: html, text, full: html, text
    fixed typo
    
• src/hg/makeDb/doc/hg19.txt
  • lines changed 19, context: html, text, full: html, text
    Updated DGV for hg18, hg19, hg38.
    refs #15767
    
• src/hg/makeDb/doc/hg38/geneid.SGP.genes.txt
  • lines changed 46, context: html, text, full: html, text
    correctly load geneid and SGP genes refs #15616 #13214
    
• src/hg/makeDb/doc/hg38/variation.txt
  • lines changed 19, context: html, text, full: html, text
    Updated DGV for hg18, hg19, hg38.
    refs #15767
    
• src/hg/makeDb/doc/loxAfr3.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 28, context: html, text, full: html, text
    loading sgpGene refs #15616 #13214
    
• src/hg/makeDb/doc/nomLeu3.txt
  • lines changed 22, context: html, text, full: html, text
    adding geneid genes refs #15616 #13214
    
• src/hg/makeDb/doc/oryCun2.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/panPan1.txt
  • lines changed 20, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/panTro4.txt
  • lines changed 20, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/papAnu2.txt
  • lines changed 21, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/ponAbe2.txt
  • lines changed 23, context: html, text, full: html, text
    loading geneid track refs #15616 #13214
    
• src/hg/makeDb/doc/rheMac3.txt
  • lines changed 19, context: html, text, full: html, text
    adding geneid gene track refs #15616 #13214
    
• src/hg/makeDb/doc/rn6.txt
  • lines changed 18, context: html, text, full: html, text
    loading sgpGene refs #15616 #13214
    
• src/hg/makeDb/trackDb/apis/chainDm1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/augustusGene.html
  • lines changed 1, context: html, text, full: html, text
    Correcting spelling error found in CR, refs #15771
    
• src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/cat/felCat4/cons6way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chainCi2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chainDm1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chainDm2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chainDm3.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chicken/galGal2/multiz7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chicken/galGal2/phastConsElements7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chicken/galGal3/caCondor454.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chicken/galGal3/multiz7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chicken/galGal3/phastConsElements7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chimp/panTro1/humanDels.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/chimp/panTro3/cons12way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/cow/bosTau4/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/cow/bosTau4/phastConsElements5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/dog/canFam1/mzHg17Mm5_phast.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/dog/canFam2/multiz4way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/dog/canFam2/phastConsElements4way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainAnoGam1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainApiMel2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDm1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDm2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDp2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDp3.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroAna1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroAna2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroEre1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroMoj1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroPer1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroSec1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroSim1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroVir1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroYak1.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/chainDroYak2.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/dm2/multiz15way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/dm2/phastConsElements15way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/dm3/multiz15way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/dm3/phastConsElements15way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/dm6/cons27way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/drosophila/mzDy1Dp2Ag1_phast.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/ebola/eboVir3/cons160way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/fugu/fr2/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/fugu/fr2/phastConsElements5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/fugu/fr3/cons8way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/geneid.html
  • lines changed 10, context: html, text, full: html, text
    updated references from Francisco email note refs #15616
    
• src/hg/makeDb/trackDb/gorilla/gorGor3/cons11way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg17/encodeMsaElements.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg19/cons100way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg19/cons46way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg38/cons100way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg38/cons17way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg38/cons7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/hg38/primateChainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/iscaComposite.html
  • lines changed 3, context: html, text, full: html, text
    Changes to ClinGen track description page and long/shortLabels, refs #14413
    
  • lines changed 39, context: html, text, full: html, text
    Changes to ClinGen compsite track description per submitters request. Update references to our current format. Change longLabel for composite to match that provided on submitters website. refs #14413
    
• src/hg/makeDb/trackDb/human/placentalChainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/primateChainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    Changes to ClinGen track description page and long/shortLabels, refs #14413
    
  • lines changed 1, context: html, text, full: html, text
    Changes to ClinGen compsite track description per submitters request. Update references to our current format. Change longLabel for composite to match that provided on submitters website. refs #14413
    
  • lines changed 3, context: html, text, full: html, text
    correct longLabel on SGP gene tracks refs #13214
    
• src/hg/makeDb/trackDb/human/vertebrateChainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/lamprey/petMar1/multiz6way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/lamprey/petMar1/phastConsElements6way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/lamprey/petMar2/cons7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/lancelet/braFlo1/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/lancelet/braFlo1/phastConsElements5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/marmoset/calJac1/multiz9way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/marmoset/calJac3/cons13way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/medaka/oryLat2/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/medaka/oryLat2/phastConsElements5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mostConserved.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm10/chainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm10/cons60way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm10/vertebrateChainNet.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm7/multiz17way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm8/multiz17way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm9/cons30way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/mm9/multiz30way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/mouse/phastConsElements17way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/opossum/monDom4/multiz7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/opossum/monDom4/phastConsElements7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/opossum/monDom5/multiz9way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/opossum/multiz5way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/orangutan/ponAbe2/multiz8way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/orangutan/ponAbe2/phastConsElements8way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/phastConsElements.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/platypus/ornAna1/multiz6way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/platypus/ornAna1/phastConsElements6way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/pubsBingBlat.html
  • lines changed 1, context: html, text, full: html, text
    Changing link on ce10 track description page. no redmine
    
• src/hg/makeDb/trackDb/rat/rn4/multiz9way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/rat/rn4/phastConsElements9way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/rat/rn5/cons13way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/sacCer/multizYeast.html
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    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/sacCer/sacCer2/multiz7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/sacCer/sacCer3/multiz7way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/stickleback/gasAcu1/multiz8way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/stickleback/gasAcu1/phastConsElements8way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/cons17way.html
  • lines changed 1, context: html, text, full: html, text
    Changing broken link on many track description pages, no redmine
    
• src/hg/makeDb/trackDb/tarsier/tarSyr2/cons20way.html
  • lines changed 1, context: html, text, full: html, text
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• src/hg/makeDb/trackDb/tetraodon/chainSelf.html
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    initial view of 26-way refs #15209
    
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