File Changes for ceisenhart

v326_base to v327_preview (2015-12-07 to 2015-12-14) v327

• src/hg/makeDb/doc/aptMan1/initialBuild.txt
  • lines changed 477, context: html, text, full: html, text
    About halfway through the aptMan build, here is the doc, refs #16029
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 17, context: html, text, full: html, text
    added aptMan brown kiwi refs #16029
    
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    added aptMan brown kiwi refs #16029
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 36, context: html, text, full: html, text
    Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
    
  • lines changed 9, context: html, text, full: html, text
    changing the all.joiner for the brown kiwi, aptMan1, refs #16029
    
• src/hg/makeDb/trackDb/birds/aptMan1/description.html
  • lines changed 63, context: html, text, full: html, text
    adding the aptMan1 files created by makeDb.pl, refs #16029
    
• src/hg/makeDb/trackDb/birds/aptMan1/gap.html
  • lines changed 30, context: html, text, full: html, text
    adding the aptMan1 files created by makeDb.pl, refs #16029
    
• src/hg/makeDb/trackDb/birds/aptMan1/gold.html
  • lines changed 34, context: html, text, full: html, text
    adding the aptMan1 files created by makeDb.pl, refs #16029
    
• src/hg/makeDb/trackDb/birds/aptMan1/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    adding the aptMan1 files created by makeDb.pl, refs #16029
    
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
    
• src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.ra
  • lines changed 1, context: html, text, full: html, text
    Changing the short label for lincRNA Transcripts to lincRNA TUCP, refs #11694
    
  • lines changed 2, context: html, text, full: html, text
    fixingi the short label lengths, refs #11694
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
    
  • lines changed 2, context: html, text, full: html, text
    Removing the override for tRNAs from trackDb, it is in nonCodingRNAs.ra, refs #11694
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    Updating the trackDb makefile to have aptMan1 in it, refs #16029
    
• src/hg/makeDb/trackDb/tRNAs.html
  • lines changed 10, context: html, text, full: html, text
    Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 12, context: html, text, full: html, text
    Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
    
  • lines changed 12, context: html, text, full: html, text
    fixing a bug Brian Lee caught immediatly, oops, refs #11694
    
• src/utils/newPythonProg/newPythonProg.c
  • lines changed 1, context: html, text, full: html, text
    fixing an issue with the common.py path, refs #16156