Commits for ceisenhart

v326_base to v327_preview (2015-12-07 to 2015-12-14) v327

• Changing the short label for lincRNA Transcripts to lincRNA TUCP, refs #11694
  
  • src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.ra - lines changed 1, context: html, text, full: html, text
• fixingi the short label lengths, refs #11694
  
  • src/hg/makeDb/trackDb/human/hg38/nonCodingRNAs.ra - lines changed 2, context: html, text, full: html, text
• adding the aptMan1 files created by makeDb.pl, refs #16029
  
  • src/hg/makeDb/trackDb/birds/aptMan1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/aptMan1/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/aptMan1/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/birds/aptMan1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• Fixing the bugs with the tRNA track, overriding for hg19 and hg38, refs #15107 and #11694
  
  • src/hg/makeDb/schema/all.joiner - lines changed 36, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tRNAs.html - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 12, context: html, text, full: html, text
• fixing a bug Brian Lee caught immediatly, oops, refs #11694
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 12, context: html, text, full: html, text
• Removing the override for tRNAs from trackDb, it is in nonCodingRNAs.ra, refs #11694
  
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text
• About halfway through the aptMan build, here is the doc, refs #16029
  
  • src/hg/makeDb/doc/aptMan1/initialBuild.txt - lines changed 477, context: html, text, full: html, text
• added aptMan brown kiwi refs #16029
  
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• changing the all.joiner for the brown kiwi, aptMan1, refs #16029
  
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text
• Updating the trackDb makefile to have aptMan1 in it, refs #16029
  
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
• fixing an issue with the common.py path, refs #16156
  
  • src/utils/newPythonProg/newPythonProg.c - lines changed 1, context: html, text, full: html, text