Commits for ceisenhart

v327_base to v328_preview (2016-01-11 to 2016-01-18) v328

• fixing up the javascript that is printed, added some options to the visualization. refs #16216
  
  • src/hg/expMatrixToJson/expMatrixToJson.c - lines changed 255, context: html, text, full: html, text
• Added a makefile and testing conditions for the matrix to visualization. Also a file to explain the expected cluster values. refs #16216
  
  • src/hg/expMatrixToJson/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/expMatrixToJson/tests/matrix.mx - lines changed 2, context: html, text, full: html, text
  • src/hg/expMatrixToJson/tests/matrixResults.txt - lines changed 7, context: html, text, full: html, text
• Adding test cases for a program in the visualization pipeline. refs #16216
  
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/meta.tab - lines changed 9, context: html, text, full: html, text
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/testClusters.html - lines changed 209, context: html, text, full: html, text
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/testClusters.json - lines changed 36, context: html, text, full: html, text
• Heavy refactoring to the .html output, now all javascript is in the file d3.dendrograms.js, refs# 16216
  
  • src/hg/expMatrixToJson/expMatrixToJson.c - lines changed 245, context: html, text, full: html, text
• The new home for the visuzlization javascript code, refs# 16468, 16216,16341
  
  • src/hg/js/d3.dendrograms.js - lines changed 578, context: html, text, full: html, text
• Refactoring this code, it no longer touches the .html files, refs# 16216
  
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/addMetaDataToJson - lines changed 53, context: html, text, full: html, text
• Test files for the addMetaDataToJson script, refs# 16182
  
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/testClusters.html - lines changed 217, context: html, text, full: html, text
  • src/hg/cirm/cdw/wrangle/addMetaDataToJson/tests/testClusters.json - lines changed 15, context: html, text, full: html, text
• Added some makefile options to make testing easier, refs #16216
  
  • src/hg/expMatrixToJson/tests/makefile - lines changed 8, context: html, text, full: html, text
• Merge branch 'refactoring'