All File Changes

v335_preview to v335_preview2 (2016-06-20 to 2016-06-27) v335

• src/hg/geoIp/README
  • lines changed 6, context: html, text, full: html, text
    8e151d5c596f18029f8b0f027902b66f720b76e1 Thu Jun 23 16:49:27 2016 -0700
    adding a backup to hive of non-git-tracked files as suggested by Max.
    
  • lines changed 10, context: html, text, full: html, text
    ce360469d3a8fbd4b54ffa823dbba24f79198a2f Thu Jun 23 17:20:23 2016 -0700
    Adding a backup dump of hgFixed geoIp data tables.
    
• src/hg/hgGene/hgGeneData/C_elegans/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/D_melanogaster/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Human/genome.ra
  • lines changed 2, context: html, text, full: html, text
    abc3d457af89c9f05fccb4afdeac6be7b01908b2 Tue Jun 21 12:09:09 2016 -0700
    change hgGeneData to point to hgFixed.refSeqSummary
    
• src/hg/hgGene/hgGeneData/Human/hg38/otherOrgs.ra
  • lines changed 20, context: html, text, full: html, text
    f968102aae596db0a1677e583f10bf894845f596 Wed Jun 22 12:28:28 2016 -0700
    make ucsc genes on hg38 use a different set of assemblies for the "other
    orgs".
    
  • lines changed 1, context: html, text, full: html, text
    21a6e23f42babbd11e4fae8f63f3e13afee5ab17 Wed Jun 22 17:40:53 2016 -0700
    fix up a query to dm6 in hgGeneData
    
• src/hg/hgGene/hgGeneData/Human/links.ra
  • lines changed 2, context: html, text, full: html, text
    2c189392a8091ded2170963623a35d606da5f7da Wed Jun 22 20:01:55 2016 -0700
    a few mentions of refLink in hgGeneData
    
• src/hg/hgGene/hgGeneData/Human/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/genome.ra
  • lines changed 2, context: html, text, full: html, text
    abc3d457af89c9f05fccb4afdeac6be7b01908b2 Tue Jun 21 12:09:09 2016 -0700
    change hgGeneData to point to hgFixed.refSeqSummary
    
• src/hg/hgGene/hgGeneData/Mouse/mm10/otherOrgs.ra
  • lines changed 22, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm3/otherOrgs.ra
  • lines changed 16, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm4/otherOrgs.ra
  • lines changed 16, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm5/otherOrgs.ra
  • lines changed 14, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm6/otherOrgs.ra
  • lines changed 14, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm7/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm8/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Mouse/mm9/otherOrgs.ra
  • lines changed 15, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Rat/genome.ra
  • lines changed 2, context: html, text, full: html, text
    abc3d457af89c9f05fccb4afdeac6be7b01908b2 Tue Jun 21 12:09:09 2016 -0700
    change hgGeneData to point to hgFixed.refSeqSummary
    
• src/hg/hgGene/hgGeneData/Rat/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Rat/rn3/genome.ra
  • lines changed 2, context: html, text, full: html, text
    abc3d457af89c9f05fccb4afdeac6be7b01908b2 Tue Jun 21 12:09:09 2016 -0700
    change hgGeneData to point to hgFixed.refSeqSummary
    
• src/hg/hgGene/hgGeneData/S_cerevisiae/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/Zebrafish/genome.ra
  • lines changed 2, context: html, text, full: html, text
    abc3d457af89c9f05fccb4afdeac6be7b01908b2 Tue Jun 21 12:09:09 2016 -0700
    change hgGeneData to point to hgFixed.refSeqSummary
    
• src/hg/hgGene/hgGeneData/Zebrafish/otherOrgs.ra
  • lines changed 24, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgGene/hgGeneData/links.ra
  • lines changed 2, context: html, text, full: html, text
    2c189392a8091ded2170963623a35d606da5f7da Wed Jun 22 20:01:55 2016 -0700
    a few mentions of refLink in hgGeneData
    
• src/hg/hgGene/hgGeneData/otherOrgs.ra
  • lines changed 13, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/hgTables/mainPage.c
  • lines changed 3, context: html, text, full: html, text
    0659fd086f068d8757dd716d12a8dd572a7de846 Fri Jun 24 12:38:05 2016 -0700
    fix HTML error in table browser if track doesn't support intersections
    
• src/hg/hgTablesTest/hgTablesTest.c
  • lines changed 74, context: html, text, full: html, text
    a2d20a840e07785d0ae88d3d27c45f5d5a28ea70 Tue Jun 21 17:27:13 2016 -0700
    improving hgTablesTest output. Now states more info about the machine it is running on, the URL to the hgTables site that it is testing against, and the database that it is connecting to. It also allows randomizing the track and table lists, and an optional seed is reported any can be set on commandline for debugging.
    
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    d6c8da3c30e51a633791c74318b4e42d5d76bd4d Tue Jun 21 11:20:34 2016 -0700
    a couple of changes to bigMaf support (no parallel load because of SQL
    access) and initialize some variables to avoid garbage memmory accesses.
    
• src/hg/hgTracks/simpleTracks.c
  • lines changed 1, context: html, text, full: html, text
    5af25d5af09cf586acbcf1c8a54d175deede25e7 Thu Jun 23 15:07:49 2016 -0700
    some tweaks in response to code review with Jonathan.
    
• src/hg/hgVai/hgVai.c
  • lines changed 42, context: html, text, full: html, text
    b3129704a8afccbcb4436ad32465c4d07c56f01c Thu Jun 23 12:40:06 2016 -0700
    Adjust to the new possibility of genbank table names having a database prefix, e.g. hgFixed.refSeqStatus. I considered libifying the new genbank functions but Braney is working on a similar situation in parallel so I'll keep them local for now. refs #17597
    
• src/hg/hgc/hgc.c
  • lines changed 3, context: html, text, full: html, text
    f63c078a660d0fef8895ce0774092855be19d52b Mon Jun 20 15:45:11 2016 -0700
    taking back bigBed click word wrap change, refs #17370
    
  • lines changed 1, context: html, text, full: html, text
    7848983f6852bfa679439cdd644eb6924edfb646 Tue Jun 21 13:47:55 2016 -0700
    not showing outlink when url is empty string, refs #17134
    
  • lines changed 8, context: html, text, full: html, text
    a1ad78bcb6927c8bea0a98e530ff8a8771cccf03 Wed Jun 22 14:35:37 2016 -0700
    Replace the annoying cdsStartStat and cdsEndStat field descriptions in
    bigGenePred.as #17370
    
• src/hg/htdocs/goldenPath/help/bigChain.html
  • lines changed 24, context: html, text, full: html, text
    0695a5d4dc73c184edf78a9966d622e525d83274 Mon Jun 20 17:12:50 2016 -0700
    More fixup of bigChain doc, refs #17325
    
  • lines changed 64, context: html, text, full: html, text
    ee36a6720df24760351ca6f9621363b26743d6f3 Fri Jun 24 15:47:23 2016 -0700
    More fixups of bigStar docs, refs #17325
    
• src/hg/htdocs/goldenPath/help/bigMaf.html
  • lines changed 118, context: html, text, full: html, text
    7d13c1c47ef0b9475c1bddcc02b10344b15be7b1 Fri Jun 24 08:30:12 2016 -0700
    Fixing up bigPsl, initial fixes on bigMaf, refs #17325
    
  • lines changed 116, context: html, text, full: html, text
    ee36a6720df24760351ca6f9621363b26743d6f3 Fri Jun 24 15:47:23 2016 -0700
    More fixups of bigStar docs, refs #17325
    
  • lines changed 4, context: html, text, full: html, text
    3cfb9e90110b29c2d3adfd96f5c578d0dd760cea Fri Jun 24 16:03:57 2016 -0700
    Grammar fixes to bigMaf.html, refs #17325
    
• src/hg/htdocs/goldenPath/help/bigPsl.html
  • lines changed 45, context: html, text, full: html, text
    b6a260c8d1e2b7e50cc764b7772d2e185ff2c660 Mon Jun 20 15:33:19 2016 -0700
    Mostly finished with bigPsl doc, refs #17325
    
  • lines changed 5, context: html, text, full: html, text
    7d13c1c47ef0b9475c1bddcc02b10344b15be7b1 Fri Jun 24 08:30:12 2016 -0700
    Fixing up bigPsl, initial fixes on bigMaf, refs #17325
    
  • lines changed 1, context: html, text, full: html, text
    ee36a6720df24760351ca6f9621363b26743d6f3 Fri Jun 24 15:47:23 2016 -0700
    More fixups of bigStar docs, refs #17325
    
• src/hg/htdocs/goldenPath/help/hgSessionHelp.html
  • lines changed 21, context: html, text, full: html, text
    ca4294de04f211cd11377620f9c65220ea790f51 Mon Jun 20 11:28:52 2016 -0700
    Adding information about new hgPublicSessions CGI, refs #15312
    
• src/hg/inc/jksql.h
  • lines changed 3, context: html, text, full: html, text
    a2d20a840e07785d0ae88d3d27c45f5d5a28ea70 Tue Jun 21 17:27:13 2016 -0700
    improving hgTablesTest output. Now states more info about the machine it is running on, the URL to the hgTables site that it is testing against, and the database that it is connecting to. It also allows randomizing the track and table lists, and an optional seed is reported any can be set on commandline for debugging.
    
• src/hg/inc/trackDb.h
  • lines changed 1, context: html, text, full: html, text
    3647e685aabe9799ce73695ac4e34b8d15891fc6 Tue Jun 21 06:51:25 2016 -0700
    add bigPsl to list of types which are bigBeds.
    
• src/hg/lib/bigGenePred.as
  • lines changed 2, context: html, text, full: html, text
    a1ad78bcb6927c8bea0a98e530ff8a8771cccf03 Wed Jun 22 14:35:37 2016 -0700
    Replace the annoying cdsStartStat and cdsEndStat field descriptions in
    bigGenePred.as #17370
    
• src/hg/lib/cartTrackDb.c
  • lines changed 5, context: html, text, full: html, text
    c74baf995ca1b7d3de1b1af4b125afa4c9d39b39 Wed Jun 22 08:55:07 2016 -0700
    Yet another case of assuming a mysql db, which breaks track hubs. refs #17582 MLQ and probably a follow-up patch request.
    
• src/hg/lib/hui.c
  • lines changed 3, context: html, text, full: html, text
    d6c8da3c30e51a633791c74318b4e42d5d76bd4d Tue Jun 21 11:20:34 2016 -0700
    a couple of changes to bigMaf support (no parallel load because of SQL
    access) and initialize some variables to avoid garbage memmory accesses.
    
• src/hg/lib/jksql.c
  • lines changed 7, context: html, text, full: html, text
    a2d20a840e07785d0ae88d3d27c45f5d5a28ea70 Tue Jun 21 17:27:13 2016 -0700
    improving hgTablesTest output. Now states more info about the machine it is running on, the URL to the hgTables site that it is testing against, and the database that it is connecting to. It also allows randomizing the track and table lists, and an optional seed is reported any can be set on commandline for debugging.
    
• src/hg/makeDb/doc/gorGor5/initialBuild.txt
  • lines changed 596, context: html, text, full: html, text
    9d19e96b3998100f6aa3ce2bbe1ad9195e075c9f Fri Jun 24 13:11:48 2016 -0700
    running genbank refs #17580
    
• src/hg/makeDb/doc/mm10.txt
  • lines changed 55, context: html, text, full: html, text
    9d8816cc89bccdd069920777ae4150cde59e8ade Wed Jun 22 14:04:52 2016 -0700
    CDS FASTA dump for mm10 knownGene version 16, refs #15315
    
  • lines changed 1, context: html, text, full: html, text
    b563d3ca7893400988f7e3aad1885fa70dea7bd0 Wed Jun 22 15:11:07 2016 -0700
    Slight fix to omit path names from md5sum file, refs #15315
    
• src/hg/makeDb/doc/ucscGenes/hg38.ucscGenes17.sh
  • lines changed 44, context: html, text, full: html, text
    43319b9d4967f68a609194350cd9e5a3458c183f Tue Jun 21 16:28:26 2016 -0700
    add hg38 knownGene blastTabs
    
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes16.csh
  • lines changed 3, context: html, text, full: html, text
    058f0c5872f8ba6d7a90535d34f61f056b6b5315 Mon Jun 20 17:17:10 2016 -0700
    Adjustments to blastTabs so that mm10 hgGene links work properly, refs #15315
    
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 17, context: html, text, full: html, text
    b9ea80d98934d4b898c64cfb3abb102ed45c2ff3 Mon Jun 20 10:53:41 2016 -0700
    Added colAng - Colobus angolensis palliatus - refs #17545
    
  • lines changed 2, context: html, text, full: html, text
    a0b0af5b45e9f97a3bd3c40e706b95dae4ae47dd Mon Jun 20 14:41:04 2016 -0700
    lost a line in the entry for colAng1 refs #17545
    
  • lines changed 17, context: html, text, full: html, text
    fe76863e06f80a5d4f967d4a0e856aec2bc74c20 Fri Jun 24 13:08:57 2016 -0700
    Added gorGor5 - Gorilla refs #17580
    
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    b9ea80d98934d4b898c64cfb3abb102ed45c2ff3 Mon Jun 20 10:53:41 2016 -0700
    Added colAng - Colobus angolensis palliatus - refs #17545
    
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    fcae0478b5eff13812f244bf0abe212c7e762a11 Mon Jun 20 15:36:15 2016 -0700
    Adding tablesIgnored entry for Patch 7 PSL table, refs #17134
    
  • lines changed 1, context: html, text, full: html, text
    dbea21ad6306c0bce58456f532caa06df32b5fd0 Tue Jun 21 07:23:21 2016 -0700
    Adding entry for Hg38Patch7 to non-self chain section, refs #17134
    
  • lines changed 4, context: html, text, full: html, text
    7a4bf54b9f989291ab9279a8996987fb892ea4c8 Thu Jun 23 14:47:49 2016 -0700
    Adding rules for mm10 Patch 4 tracks, refs #16414
    
• src/hg/makeDb/trackDb/gorilla/gorGor5/description.html
  • lines changed 64, context: html, text, full: html, text
    1b22c6a82a2b28ec3a8e0023193d050a5ed74c6b Tue Jun 21 11:12:47 2016 -0700
    adding gorGor5 to the build refs #17580
    
• src/hg/makeDb/trackDb/gorilla/gorGor5/gap.html
  • lines changed 37, context: html, text, full: html, text
    1b22c6a82a2b28ec3a8e0023193d050a5ed74c6b Tue Jun 21 11:12:47 2016 -0700
    adding gorGor5 to the build refs #17580
    
• src/hg/makeDb/trackDb/gorilla/gorGor5/gold.html
  • lines changed 29, context: html, text, full: html, text
    1b22c6a82a2b28ec3a8e0023193d050a5ed74c6b Tue Jun 21 11:12:47 2016 -0700
    adding gorGor5 to the build refs #17580
    
• src/hg/makeDb/trackDb/gorilla/gorGor5/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    1b22c6a82a2b28ec3a8e0023193d050a5ed74c6b Tue Jun 21 11:12:47 2016 -0700
    adding gorGor5 to the build refs #17580
    
• src/hg/makeDb/trackDb/human/cloneEndSuper.html
  • lines changed 2, context: html, text, full: html, text
    91c6207a9b656654f10647280408c7199f98c0da Wed Jun 22 00:01:00 2016 -0700
    fixing html problems found by hgTablesTest using htmlCheck lib.
    
  • lines changed 8, context: html, text, full: html, text
    75d89003e57d781c616041760b78d81f66b8ee3c Wed Jun 22 09:57:43 2016 -0700
    Adding description of track coloring, refs #17418
    
• src/hg/makeDb/trackDb/human/geneReviews.html
  • lines changed 20, context: html, text, full: html, text
    91c6207a9b656654f10647280408c7199f98c0da Wed Jun 22 00:01:00 2016 -0700
    fixing html problems found by hgTablesTest using htmlCheck lib.
    
• src/hg/makeDb/trackDb/human/hg38/cons17way.html
  • lines changed 2, context: html, text, full: html, text
    878ad644a5262f2c97b33ddeb2346cc4239dc746 Mon Jun 20 17:43:21 2016 -0700
    fixing html errors found by hgTablesTest which uses our htmlCheck lib.
    
• src/hg/makeDb/trackDb/human/hg38/cons20way.html
  • lines changed 1, context: html, text, full: html, text
    878ad644a5262f2c97b33ddeb2346cc4239dc746 Mon Jun 20 17:43:21 2016 -0700
    fixing html errors found by hgTablesTest which uses our htmlCheck lib.
    
• src/hg/makeDb/trackDb/human/hg38/hg38Patch7.html
  • lines changed 5, context: html, text, full: html, text
    3de521c7b40b2157439c484af81d3348cf7f5245 Mon Jun 20 11:27:30 2016 -0700
    Minor changes to hg38Patch7 page format, refs #17134
    
• src/hg/makeDb/trackDb/human/hg38/knownGene.html
  • lines changed 1, context: html, text, full: html, text
    878ad644a5262f2c97b33ddeb2346cc4239dc746 Mon Jun 20 17:43:21 2016 -0700
    fixing html errors found by hgTablesTest which uses our htmlCheck lib.
    
• src/hg/makeDb/trackDb/human/hg38/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    e1a920a30f33c3f9186b17333e478375c3023fcf Thu Jun 23 08:10:06 2016 -0700
    Removing include for previous patch ra file, removing release tags for current patch, refs #17134
    
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 39, context: html, text, full: html, text
    d37da09ffbaad9d3d85dfae7d18de61fd4868523 Tue Jun 21 14:25:15 2016 -0700
    Allowing OMIM restricted access data release for TB and DI on rr, refs #4458
    
• src/hg/makeDb/trackDb/makefile
  • lines changed 1, context: html, text, full: html, text
    d373048b44e1f8a88db5f7442d9e7c04516eb3d6 Tue Jun 21 11:12:39 2016 -0700
    adding gorGor5 to the build refs #17580
    
• src/hg/makeDb/trackDb/mouse/cloneEndSuper.html
  • lines changed 8, context: html, text, full: html, text
    6f12dbb2573710a0e8b519ac48ea23dae07a0c77 Wed Jun 22 08:48:40 2016 -0700
    Adding description of track coloring, refs #17418
    
• src/hg/makeDb/trackDb/mouse/mm10/mm10Patch4.ra
  • lines changed 1, context: html, text, full: html, text
    a14d87c2d3a09a8fd40b78975f29c32f183823bd Thu Jun 23 13:37:02 2016 -0700
    Removing Patch release number from shortLabel to bring it under 17 char limit, refs #16414
    
• src/hg/makeDb/trackDb/rat/rn6/cloneEndSuper.html
  • lines changed 7, context: html, text, full: html, text
    75d89003e57d781c616041760b78d81f66b8ee3c Wed Jun 22 09:57:43 2016 -0700
    Adding description of track coloring, refs #17418
    
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    1a102422484bd04826e37f56f2a05abb197a1ef5 Tue Jun 21 14:57:26 2016 -0700
    Removing oreganno release tag to add the track back to the rr, refs #17278
    
• src/hg/trfBig/trfBig.c
  • lines changed 17, context: html, text, full: html, text
    be5f3b3d7f1653df940b1937a5caffe21b3cf24b Fri Jun 24 17:04:09 2016 -0700
    now using new trf v4.09 for simple repeats refs #17580
    
• src/hg/utils/automation/doSimpleRepeat.pl
  • lines changed 19, context: html, text, full: html, text
    be5f3b3d7f1653df940b1937a5caffe21b3cf24b Fri Jun 24 17:04:09 2016 -0700
    now using new trf v4.09 for simple repeats refs #17580
    
• src/hg/utils/automation/makeGenomeDb.pl
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    ac9d6872f9c6089afe0aaa4dedaf0fd5e8fe50cf Tue Jun 21 10:59:31 2016 -0700
    correct label for biosample in html refs #17425
    
• src/hg/utils/otto/gwas/checkGwas.sh
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    13ae98eb7b6d5f3f37288d877d53507ce8acf7fa Fri Jun 24 10:31:05 2016 -0700
    Fixes to GWAS Catalog otto pipeline, refs #14465
    
• src/hg/utils/otto/gwas/perlParser.pl
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    13ae98eb7b6d5f3f37288d877d53507ce8acf7fa Fri Jun 24 10:31:05 2016 -0700
    Fixes to GWAS Catalog otto pipeline, refs #14465
    
• src/hg/utils/otto/isca/checkISCA.sh
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    54e9b135f79ca46e7d183560ff9f5c80180749e9 Fri Jun 24 11:31:04 2016 -0700
    ISCA track was getting bad timestamps and not always updating when the data files on the ftp server were changed.
    
• src/inc/bedTabix.h
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    5af25d5af09cf586acbcf1c8a54d175deede25e7 Thu Jun 23 15:07:49 2016 -0700
    some tweaks in response to code review with Jonathan.
    
• src/lib/bedTabix.c
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    5af25d5af09cf586acbcf1c8a54d175deede25e7 Thu Jun 23 15:07:49 2016 -0700
    some tweaks in response to code review with Jonathan.
    
• src/lib/mgCircle.c
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    6c59ed930cf0e738591236774c7244fd8567da2a Mon Jun 20 16:26:53 2016 -0700
    fixed typo in comment
    
• src/parasol/para/para.c
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    1b0d07ffc934973e6d31a1d8596429bd94c96f19 Sat Jun 18 09:56:36 2016 -0700
    fix typo in comment
    
• src/product/installer/README.md
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    0391df3862d0a290d2a1982ae9c165fa6722587b Wed Jun 22 11:57:05 2016 -0700
    Fixing a few typos from code review, refs #14399
    
• src/utils/qa/weeklybld/buildEnv.csh
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    af9f6348d8c6714b66220f7c763c085a30015989 Mon Jun 27 10:01:43 2016 -0700
    v335 preview2 refs #17576
    

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