File Changes for max

v339_preview to v339_preview2 (2016-09-12 to 2016-09-19) v339

• src/hg/hgc/bigBedClick.c
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    2a17d0be037117b42ee7c740fd98fadf0e58aff2 Mon Sep 12 16:58:05 2016 -0700
    changes after code review, refs #18067
    
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/htdocs/goldenPath/help/bigBed.html
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    2a17d0be037117b42ee7c740fd98fadf0e58aff2 Mon Sep 12 16:58:05 2016 -0700
    changes after code review, refs #18067
    
• src/hg/htdocs/images/crisprFig_effScores.png
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    2a17d0be037117b42ee7c740fd98fadf0e58aff2 Mon Sep 12 16:58:05 2016 -0700
    changes after code review, refs #18067
    
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/htdocs/images/crisprFig_mitScore.png
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    2a17d0be037117b42ee7c740fd98fadf0e58aff2 Mon Sep 12 16:58:05 2016 -0700
    changes after code review, refs #18067
    
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/README.txt
  • lines changed 20, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/convOffs.py
  • lines changed 218, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
  • lines changed 2, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/createBigBed.py
  • lines changed 269, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
  • lines changed 29, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/crispr.as
  • lines changed 24, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
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    6a6601af833d56ea447e086ceffc061c5c7054e9 Thu Sep 15 10:50:11 2016 -0700
    fixing .as file for crispr track, refs #17235
    
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/crisprScanRanks.tab
  • lines changed 175, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/doCrispr.sh
  • lines changed 143, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/findGuides.py
  • lines changed 203, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/fusiRanks.tab
  • lines changed 111, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/jobCalcEffScores.py
  • lines changed 64, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/lib/twobitreader/__init__.py
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/lib/twobitreader/__main__.py
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/lib/twobitreader/download.py
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/makeSpecJoblist.py
  • lines changed 26, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/makefile
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
  • lines changed 7, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/crisprTrack/splitGuidesEffScore.py
  • lines changed 79, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/crisprTrack/splitGuidesSpecScore.py
  • lines changed 94, context: html, text, full: html, text
    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
• src/hg/makeDb/doc/ce10.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/ci2.txt
  • lines changed 3, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/danRer7.txt
  • lines changed 3, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/dm6.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/hg19.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/hg38/crispr.txt
  • lines changed 2, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/mm10.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/rn5.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/doc/sacCer3.txt
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/trackDb/crispr.html
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
• src/hg/makeDb/trackDb/trackDb.ra
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    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235
    
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    2ab1d0e97c6166a86f047eeef1492750267bde3f Fri Sep 16 10:34:32 2016 -0700
    small changes to trackDb after feedback from Matt, refs #17235
    
• src/utils/doCrispr.sh
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    a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700
    finally committing all missing pieces of the crispr track pipeline, refs #17235
    
  • lines changed 133, context: html, text, full: html, text
    9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700
    a bunch of small fixes to the crispr track, hopefully last round before
    the pushq. refs #17235