Commits for max

v339_preview to v339_preview2 (2016-09-12 to 2016-09-19) v339

2a17d0be037117b42ee7c740fd98fadf0e58aff2 Mon Sep 12 16:58:05 2016 -0700

• changes after code review, refs #18067
  
  • src/hg/hgc/bigBedClick.c - lines changed 17, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/bigBed.html - lines changed 14, context: html, text, full: html, text
  • src/hg/htdocs/images/crisprFig_effScores.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/images/crisprFig_mitScore.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

a21f21b13b09a794b09e89168a51d4c8a1da85af Wed Sep 14 11:47:52 2016 -0700

• finally committing all missing pieces of the crispr track pipeline, refs #17235
  
  • src/hg/htdocs/images/crisprFig_effScores.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/crisprTrack/README.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/convOffs.py - lines changed 218, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/createBigBed.py - lines changed 269, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/crispr.as - lines changed 24, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/crisprScanRanks.tab - lines changed 175, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/findGuides.py - lines changed 203, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/fusiRanks.tab - lines changed 111, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/jobCalcEffScores.py - lines changed 64, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/lib/twobitreader/__init__.py - lines changed 698, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/lib/twobitreader/__main__.py - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/lib/twobitreader/download.py - lines changed 50, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/makeSpecJoblist.py - lines changed 26, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/splitGuidesEffScore.py - lines changed 79, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/splitGuidesSpecScore.py - lines changed 94, context: html, text, full: html, text
  • src/utils/doCrispr.sh - lines changed 5, context: html, text, full: html, text

6a6601af833d56ea447e086ceffc061c5c7054e9 Thu Sep 15 10:50:11 2016 -0700

• fixing .as file for crispr track, refs #17235
  
  • src/hg/makeDb/crisprTrack/crispr.as - lines changed 2, context: html, text, full: html, text

9037401af48af40c7df11285b7d3bb713e6c75d8 Thu Sep 15 16:45:06 2016 -0700

• a bunch of small fixes to the crispr track, hopefully last round before
  the pushq. refs #17235
  
  • src/hg/hgc/bigBedClick.c - lines changed 7, context: html, text, full: html, text
  • src/hg/htdocs/images/crisprFig_effScores.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/htdocs/images/crisprFig_mitScore.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/crisprTrack/convOffs.py - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/createBigBed.py - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/crispr.as - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/doCrispr.sh - lines changed 143, context: html, text, full: html, text
  • src/hg/makeDb/crisprTrack/makefile - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/doc/ce10.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/ci2.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/danRer7.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/dm6.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg38/crispr.txt - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/doc/mm10.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/rn5.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/doc/sacCer3.txt - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/crispr.html - lines changed 163, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/utils/doCrispr.sh - lines changed 133, context: html, text, full: html, text

2ab1d0e97c6166a86f047eeef1492750267bde3f Fri Sep 16 10:34:32 2016 -0700

• small changes to trackDb after feedback from Matt, refs #17235
  
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 67, context: html, text, full: html, text