File Changes for galt

v348_base to v349_preview (2017-04-24 to 2017-05-01) v349

• src/hg/encode3/encodeDataWarehouse/edwRunDaemon/edwRunDaemon.c
  • lines changed 2, context: html, text, full: html, text
    b5ee46a6dd9ae05c81783d6eff6e3fa72d4e29b3 Tue Apr 25 09:47:30 2017 -0700
    more fallout from moving a readAndIgnore routine to obscure.c
• src/hg/hgLogin/hgLogin.c
  • lines changed 26, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/hg/hgTracks/config.c
  • lines changed 25, context: html, text, full: html, text
    71b6403f90f9f221004a07cbd4e5aecedd9f6438 Mon Apr 24 12:41:27 2017 -0700
    Refs #17538. Adds ability for user to paste a custom BED region into the multi-region dialog box instead of having to provide a URL to an on-line server. It still supports the URL through UDC however, which is more efficient for large custom region lists and also provides backwards compatibility. Uses sha1 instead of md5 for faster speed now.
• src/hg/hgTracks/hgTracks.c
  • lines changed 158, context: html, text, full: html, text
    71b6403f90f9f221004a07cbd4e5aecedd9f6438 Mon Apr 24 12:41:27 2017 -0700
    Refs #17538. Adds ability for user to paste a custom BED region into the multi-region dialog box instead of having to provide a URL to an on-line server. It still supports the URL through UDC however, which is more efficient for large custom region lists and also provides backwards compatibility. Uses sha1 instead of md5 for faster speed now.
  • lines changed 5, context: html, text, full: html, text
    a3c54789f08140d5c91b7d3c011a6fc9b967560f Mon Apr 24 14:56:51 2017 -0700
    Add a little touch to keep sha1 from the trash cleaner. refs #17358
  • lines changed 1, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
  • lines changed 2, context: html, text, full: html, text
    08192e6c87c63c4e0c9e448846dd7f195af73c88 Wed Apr 26 14:26:02 2017 -0700
    shift from name sha1 to rSha1 to avoid link problems with openssl.
  • lines changed 6, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/hg/lib/customFactory.c
  • lines changed 13, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
• src/hg/lib/wikiLink.c
  • lines changed 4, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
  • lines changed 26, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
• src/inc/common.mk
  • lines changed 9, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/inc/obscure.h
  • lines changed 3, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
• src/inc/rSha1.h
  • lines changed 42, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
  • lines changed 42, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/inc/sha1.h
  • lines changed 5, context: html, text, full: html, text
    71b6403f90f9f221004a07cbd4e5aecedd9f6438 Mon Apr 24 12:41:27 2017 -0700
    Refs #17538. Adds ability for user to paste a custom BED region into the multi-region dialog box instead of having to provide a URL to an on-line server. It still supports the URL through UDC however, which is more efficient for large custom region lists and also provides backwards compatibility. Uses sha1 instead of md5 for faster speed now.
  • lines changed 40, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
• src/lib/hmac.c
  • lines changed 24, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/https.c
  • lines changed 16, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/makefile
  • lines changed 2, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
  • lines changed 1, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/obscure.c
  • lines changed 14, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
• src/lib/rSha1.c
  • lines changed 240, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
  • lines changed 240, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/sha1.c
  • lines changed 18, context: html, text, full: html, text
    71b6403f90f9f221004a07cbd4e5aecedd9f6438 Mon Apr 24 12:41:27 2017 -0700
    Refs #17538. Adds ability for user to paste a custom BED region into the multi-region dialog box instead of having to provide a URL to an on-line server. It still supports the URL through UDC however, which is more efficient for large custom region lists and also provides backwards compatibility. Uses sha1 instead of md5 for faster speed now.
  • lines changed 240, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
• src/lib/tests/makefile
  • lines changed 4, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
  • lines changed 5, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/tests/rSha1Test.c
  • lines changed 219, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
  • lines changed 219, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/lib/tests/sha1Test.c
  • lines changed 11, context: html, text, full: html, text
    71b6403f90f9f221004a07cbd4e5aecedd9f6438 Mon Apr 24 12:41:27 2017 -0700
    Refs #17538. Adds ability for user to paste a custom BED region into the multi-region dialog box instead of having to provide a URL to an on-line server. It still supports the URL through UDC however, which is more efficient for large custom region lists and also provides backwards compatibility. Uses sha1 instead of md5 for faster speed now.
  • lines changed 219, context: html, text, full: html, text
    5cc4a16511d6a2980e27a1225e2f90c72b5ea077 Wed Apr 26 14:19:28 2017 -0700
    -Renaming sha1 to rSha1 etc to avoid silent name collision during linking.
• src/lib/udc.c
  • lines changed 4, context: html, text, full: html, text
    4ddb5c55d4f4e8ad0375aab9bb2fad80d39b4c40 Mon Apr 24 16:34:06 2017 -0700
    refs #17358. Improves trash file touching for multi-region custom bed regions temp files.
  • lines changed 4, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/product/README.building.source
  • lines changed 12, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/product/installer/browserSetup.sh
  • lines changed 1, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/userApps/Makefile
  • lines changed 2, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/utils/qa/weeklybld/buildOneUseCase
  • lines changed 6, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/utils/qa/weeklybld/buildWithUseCases
  • lines changed 1, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/utils/qa/weeklybld/defaultBuildSettings.mk
  • lines changed 1, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.
• src/utils/qa/weeklybld/downloadBuildSettings.mk
  • lines changed 1, context: html, text, full: html, text
    d9719e1d52b657fec9bf6676c85a4d2458fd7e89 Thu Apr 27 15:54:31 2017 -0700
    Remove optional compile switch USE_SSL so that openssl is now an official kent repo dependency. Also using openssl sha1 in hgTracks multiregion. refs #17358.