File Changes for kent

v350_preview to v350_preview2 (2017-05-22 to 2017-05-29) v350

• src/hca/LICENSE
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    3160a4f9e2924dbc4c828706a30c6a8112b587f1 Thu May 18 23:19:16 2017 -0700
    Making directory for Human Cell Atlas work.
• src/hca/README
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    3160a4f9e2924dbc4c828706a30c6a8112b587f1 Thu May 18 23:19:16 2017 -0700
    Making directory for Human Cell Atlas work.
• src/hca/oneShot/hcaTsvToJson1/hcaTsvToJson1.c
  • lines changed 181, context: html, text, full: html, text
    f26f0a56e8e42e7a5861dab0922af4455ceb5d56 Fri May 19 07:02:46 2017 -0700
    First cut of utility to convert tab-separated-file to json files for HCA.
  • lines changed 4, context: html, text, full: html, text
    95778c97815df7fa4d8d05d41df9dc579fffebbd Fri May 19 07:05:22 2017 -0700
    Improving usage message.
• src/hca/oneShot/hcaTsvToJson2/hcaTsvToJson2.c
  • lines changed 212, context: html, text, full: html, text
    0a0567053d3755a321545b62a5475ab3a52d9711 Wed May 24 00:05:02 2017 -0700
    Adding some uuids in.
• src/hca/oneShot/hcaTsvToJson2/makefile
  • lines changed 4, context: html, text, full: html, text
    0a0567053d3755a321545b62a5475ab3a52d9711 Wed May 24 00:05:02 2017 -0700
    Adding some uuids in.
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    2b7dcf8cbbabd34aee0ff9a8e064b662fbc51213 Wed May 24 09:02:08 2017 -0700
    Moving -luuid line in makefile as per Hiram's advice and now it actually links!
• src/inc/tagToSql.h
  • lines changed 4, context: html, text, full: html, text
    8baf466781afe94e75e47aafe7e123b63284450c Fri May 26 12:37:53 2017 -0700
    Refactoring to move routine to print a tagStorm schema line from tagStormInfo to tagToSql.c for reuse in tabInfo.
• src/lib/tagToSql.c
  • lines changed 98, context: html, text, full: html, text
    8baf466781afe94e75e47aafe7e123b63284450c Fri May 26 12:37:53 2017 -0700
    Refactoring to move routine to print a tagStorm schema line from tagStormInfo to tagToSql.c for reuse in tabInfo.
  • lines changed 1, context: html, text, full: html, text
    11a457ee3cba6ca5739c8b2607533d597c20e774 Fri May 26 12:50:35 2017 -0700
    Fixing a refactoring induced bug. Subtle one!
• src/makefile
  • lines changed 1, context: html, text, full: html, text
    1e640abe5f2d2cb1b5e9797db12427893b2d4bec Fri May 26 13:34:28 2017 -0700
    Adding tabFile to make dirs.
• src/tabFile/LICENSE
  • lines changed 18, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tabFile/README
  • lines changed 3, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tabFile/makefile
  • lines changed 32, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tabFile/tabInfo/makefile
  • lines changed 3, context: html, text, full: html, text
    3ab2c488f953187a6f6849b3d75f40126bb02703 Fri May 26 12:51:46 2017 -0700
    Making a tagInfo utility that parallels tagStormInfo.
• src/tabFile/tabInfo/tabInfo.c
  • lines changed 165, context: html, text, full: html, text
    3ab2c488f953187a6f6849b3d75f40126bb02703 Fri May 26 12:51:46 2017 -0700
    Making a tagInfo utility that parallels tagStormInfo.
• src/tabFile/tabInfo/test.in
  • lines changed 3370, context: html, text, full: html, text
    3ab2c488f953187a6f6849b3d75f40126bb02703 Fri May 26 12:51:46 2017 -0700
    Making a tagInfo utility that parallels tagStormInfo.
• src/tabFile/tabQuery/makefile
  • lines changed 3, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tabFile/tabQuery/tabQuery.c
  • lines changed 157, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tagStorm/LICENSE
  • lines changed 1, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/tagStorm/README
  • lines changed 12, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
  • lines changed 1, context: html, text, full: html, text
    7b319f59e8c9183d7938f5e4e8b2b43caaa77d8d Fri May 26 13:25:48 2017 -0700
    Referencing LICENSE file in README file.
• src/tagStorm/tagStormFromTab/tagStormFromTab.c
  • lines changed 200, context: html, text, full: html, text
    f39997389acdbf7e4da32594c892938edabfcdf9 Thu May 11 12:50:42 2017 -0700
    Adding -spec option.
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    bff6ae7c3087d5ed8b47dc77a6eae593d475603b Tue May 23 13:37:21 2017 -0700
    Removing some debugging set.
• src/tagStorm/tagStormInfo/tagStormInfo.c
  • lines changed 91, context: html, text, full: html, text
    8baf466781afe94e75e47aafe7e123b63284450c Fri May 26 12:37:53 2017 -0700
    Refactoring to move routine to print a tagStorm schema line from tagStormInfo to tagToSql.c for reuse in tabInfo.
• src/tagStorm/tagStormInfo/tests/expected.out
  • lines changed 1, context: html, text, full: html, text
    cc384aecda6ac58a6236790d7cb3c89ffd084987 Fri May 26 12:32:50 2017 -0700
    Updating expected test set results.
• src/tagStorm/tagStormInfo/tests/expected.schema
  • lines changed 2, context: html, text, full: html, text
    cc384aecda6ac58a6236790d7cb3c89ffd084987 Fri May 26 12:32:50 2017 -0700
    Updating expected test set results.
  • lines changed 2, context: html, text, full: html, text
    52bfb2c4a2b1d876e2d4a57625d7752fb1e0f8cd Fri May 26 12:50:00 2017 -0700
    Fixing expected schema again
• src/tagStorm/tagStormQuery/tagStormQuery.c
  • lines changed 17, context: html, text, full: html, text
    7e03b72e0c404ba2d76a28e43f2a3e8774e783a6 Fri May 26 13:26:57 2017 -0700
    Dealing with consequences of librarification of tagStormQuery.
• src/tagStorm/tagStormScalarToArray/makefile
  • lines changed 7, context: html, text, full: html, text
    5ca9a01cf702e61fb67b56694ff9999b43ebe149 Wed May 24 22:00:30 2017 -0700
    Making utility to convert older tagStorms to format that can support comma separated values similar to the csv format for array values.
• src/tagStorm/tagStormScalarToArray/tagStormScalarToArray.c
  • lines changed 99, context: html, text, full: html, text
    5ca9a01cf702e61fb67b56694ff9999b43ebe149 Wed May 24 22:00:30 2017 -0700
    Making utility to convert older tagStorms to format that can support comma separated values similar to the csv format for array values.
• src/tagStorm/tagStormScalarToArray/test.expected
  • lines changed 12, context: html, text, full: html, text
    5ca9a01cf702e61fb67b56694ff9999b43ebe149 Wed May 24 22:00:30 2017 -0700
    Making utility to convert older tagStorms to format that can support comma separated values similar to the csv format for array values.
• src/tagStorm/tagStormScalarToArray/test.in
  • lines changed 12, context: html, text, full: html, text
    5ca9a01cf702e61fb67b56694ff9999b43ebe149 Wed May 24 22:00:30 2017 -0700
    Making utility to convert older tagStorms to format that can support comma separated values similar to the csv format for array values.
• src/utils/addCols/addCols.c
  • lines changed 25, context: html, text, full: html, text
    11b5d7088f505cdc4f678d3451d63bed4a3019f9 Fri May 26 13:28:25 2017 -0700
    Adding maxCols option so can handle more than 16.
• src/utils/makefile
  • lines changed 1, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/utils/tabQuery/makefile
  • lines changed 3, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
• src/utils/tabQuery/tabQuery.c
  • lines changed 157, context: html, text, full: html, text
    c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700
    Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.