Commits for kent

v350_preview to v350_preview2 (2017-05-22 to 2017-05-29) v350

f39997389acdbf7e4da32594c892938edabfcdf9 Thu May 11 12:50:42 2017 -0700

• Adding -spec option.
  • src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 200, context: html, text, full: html, text

3160a4f9e2924dbc4c828706a30c6a8112b587f1 Thu May 18 23:19:16 2017 -0700

• Making directory for Human Cell Atlas work.
  • src/hca/LICENSE - lines changed 18, context: html, text, full: html, text
  • src/hca/README - lines changed 1, context: html, text, full: html, text

f26f0a56e8e42e7a5861dab0922af4455ceb5d56 Fri May 19 07:02:46 2017 -0700

• First cut of utility to convert tab-separated-file to json files for HCA.
  • src/hca/oneShot/hcaTsvToJson1/hcaTsvToJson1.c - lines changed 181, context: html, text, full: html, text

95778c97815df7fa4d8d05d41df9dc579fffebbd Fri May 19 07:05:22 2017 -0700

• Improving usage message.
  • src/hca/oneShot/hcaTsvToJson1/hcaTsvToJson1.c - lines changed 4, context: html, text, full: html, text

bff6ae7c3087d5ed8b47dc77a6eae593d475603b Tue May 23 13:37:21 2017 -0700

• Removing some debugging set.
  • src/tagStorm/tagStormFromTab/tagStormFromTab.c - lines changed 3, context: html, text, full: html, text

0a0567053d3755a321545b62a5475ab3a52d9711 Wed May 24 00:05:02 2017 -0700

• Adding some uuids in.
  • src/hca/oneShot/hcaTsvToJson2/hcaTsvToJson2.c - lines changed 212, context: html, text, full: html, text
  • src/hca/oneShot/hcaTsvToJson2/makefile - lines changed 4, context: html, text, full: html, text

2b7dcf8cbbabd34aee0ff9a8e064b662fbc51213 Wed May 24 09:02:08 2017 -0700

• Moving -luuid line in makefile as per Hiram's advice and now it actually links!
  • src/hca/oneShot/hcaTsvToJson2/makefile - lines changed 2, context: html, text, full: html, text

5ca9a01cf702e61fb67b56694ff9999b43ebe149 Wed May 24 22:00:30 2017 -0700

• Making utility to convert older tagStorms to format that can support comma separated values similar to the csv format for array values.
  • src/tagStorm/tagStormScalarToArray/makefile - lines changed 7, context: html, text, full: html, text
  • src/tagStorm/tagStormScalarToArray/tagStormScalarToArray.c - lines changed 99, context: html, text, full: html, text
  • src/tagStorm/tagStormScalarToArray/test.expected - lines changed 12, context: html, text, full: html, text
  • src/tagStorm/tagStormScalarToArray/test.in - lines changed 12, context: html, text, full: html, text

c1702f4d7e442e45db8d6f40d581f70b975d1340 Fri May 26 10:59:08 2017 -0700

• Creating a new directory for tab-separated-file utilities and seeding it with tabQuery formerly in the utils directory.
  • src/tabFile/LICENSE - lines changed 18, context: html, text, full: html, text
  • src/tabFile/README - lines changed 3, context: html, text, full: html, text
  • src/tabFile/makefile - lines changed 32, context: html, text, full: html, text
  • src/tabFile/tabQuery/makefile - lines changed 3, context: html, text, full: html, text
  • src/tabFile/tabQuery/tabQuery.c - lines changed 157, context: html, text, full: html, text
  • src/tagStorm/LICENSE - lines changed 1, context: html, text, full: html, text
  • src/tagStorm/README - lines changed 12, context: html, text, full: html, text
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/tabQuery/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/tabQuery/tabQuery.c - lines changed 157, context: html, text, full: html, text

cc384aecda6ac58a6236790d7cb3c89ffd084987 Fri May 26 12:32:50 2017 -0700

• Updating expected test set results.
  • src/tagStorm/tagStormInfo/tests/expected.out - lines changed 1, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tests/expected.schema - lines changed 2, context: html, text, full: html, text

8baf466781afe94e75e47aafe7e123b63284450c Fri May 26 12:37:53 2017 -0700

• Refactoring to move routine to print a tagStorm schema line from tagStormInfo to tagToSql.c for reuse in tabInfo.
  • src/inc/tagToSql.h - lines changed 4, context: html, text, full: html, text
  • src/lib/tagToSql.c - lines changed 98, context: html, text, full: html, text
  • src/tagStorm/tagStormInfo/tagStormInfo.c - lines changed 91, context: html, text, full: html, text

52bfb2c4a2b1d876e2d4a57625d7752fb1e0f8cd Fri May 26 12:50:00 2017 -0700

• Fixing expected schema again
  • src/tagStorm/tagStormInfo/tests/expected.schema - lines changed 2, context: html, text, full: html, text

11a457ee3cba6ca5739c8b2607533d597c20e774 Fri May 26 12:50:35 2017 -0700

• Fixing a refactoring induced bug. Subtle one!
  • src/lib/tagToSql.c - lines changed 1, context: html, text, full: html, text

3ab2c488f953187a6f6849b3d75f40126bb02703 Fri May 26 12:51:46 2017 -0700

• Making a tagInfo utility that parallels tagStormInfo.
  • src/tabFile/tabInfo/makefile - lines changed 3, context: html, text, full: html, text
  • src/tabFile/tabInfo/tabInfo.c - lines changed 165, context: html, text, full: html, text
  • src/tabFile/tabInfo/test.in - lines changed 3370, context: html, text, full: html, text

7b319f59e8c9183d7938f5e4e8b2b43caaa77d8d Fri May 26 13:25:48 2017 -0700

• Referencing LICENSE file in README file.
  • src/tagStorm/README - lines changed 1, context: html, text, full: html, text

7e03b72e0c404ba2d76a28e43f2a3e8774e783a6 Fri May 26 13:26:57 2017 -0700

• Dealing with consequences of librarification of tagStormQuery.
  • src/tagStorm/tagStormQuery/tagStormQuery.c - lines changed 17, context: html, text, full: html, text

11b5d7088f505cdc4f678d3451d63bed4a3019f9 Fri May 26 13:28:25 2017 -0700

• Adding maxCols option so can handle more than 16.
  • src/utils/addCols/addCols.c - lines changed 25, context: html, text, full: html, text

1e640abe5f2d2cb1b5e9797db12427893b2d4bec Fri May 26 13:34:28 2017 -0700

• Adding tabFile to make dirs.
  • src/makefile - lines changed 1, context: html, text, full: html, text