Commits for kate

v352_preview to v352_preview2 (2017-07-03 to 2017-07-10) v352

c5e7de3acfdc5a8290417df8161a23f5b02c92a7 Mon Jun 26 11:32:48 2017 -0700

• Add GTEx eQTL cluster track initial code support. refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 71, context: html, text, full: html, text
  • src/hg/hgTracks/gtexEqtlTracks.c - lines changed 26, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 6, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 552, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text

6d65c7caa2da509639f5dba2fa2b30eab2d82c02 Mon Jun 26 14:35:27 2017 -0700

• Add mouseover with tissue names and effect sizes. Commented out code to show colors (not working). refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 51, context: html, text, full: html, text

0846eb5a094ecf1f8400f5ea091f3e6727794477 Mon Jun 26 14:42:15 2017 -0700

• Remove debug stmts. refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 2, context: html, text, full: html, text

f822a574e460d88df6c5c7d841cd2052374a4896 Mon Jun 26 18:04:31 2017 -0700

• Adding lib file. refs #15646
  • src/hg/lib/gtexEqtlCluster.c - lines changed 272, context: html, text, full: html, text

707bd9f05c4c104fb6a90a680aa72d38895b67a3 Mon Jun 26 18:32:29 2017 -0700

• Details page. refs #15646
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 72, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgc/hgc.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtlCluster.html - lines changed 41, context: html, text, full: html, text

1217988d31947663be0f94309c9e8dbc9867b06e Wed Jun 28 08:22:50 2017 -0700

• Fix problem with thresholding. refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 7, context: html, text, full: html, text

45c5e17075e31abf2735b09ca201d29ce6e0e1f4 Thu Jun 29 18:17:22 2017 -0700

• Add trackUi (body map and right-click versions) and implement filters in hgTracks. refs #15646
  • src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c - lines changed 56, context: html, text, full: html, text
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 124, context: html, text, full: html, text
  • src/hg/inc/gtexUi.h - lines changed 48, context: html, text, full: html, text
  • src/hg/inc/hui.h - lines changed 20, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtlCluster.html - lines changed 3, context: html, text, full: html, text

8d724c5b24b55e805c0f57542676a35f5dc30494 Thu Jun 29 18:18:40 2017 -0700

• Expand details page. refs #15646
  • src/hg/hgc/gtexClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 49, context: html, text, full: html, text

64d9809600ba9cf12c331e053533886817523405 Thu Jun 29 18:19:09 2017 -0700

• Add trackUi (body map and right-click versions) and implement filters in hgTracks. refs #15646
  • src/hg/lib/gtexUi.c - lines changed 110, context: html, text, full: html, text

a3de0378c0ef6ffff6fd40e77407b2b8b80b5573 Wed Jul 5 12:00:34 2017 -0700

• Allow bin field for speedup. refs #15646
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 17, context: html, text, full: html, text

0a35a5aef108000ab4d18b84f0bdbb882e0d59e0 Wed Jul 5 14:20:15 2017 -0700

• Add flanking sequence to position link so border eQTL's show up in display. refs #15646
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 8, context: html, text, full: html, text

5078b92cebab8e340d4c0d68e6d9e02f49c8db45 Wed Jul 5 14:23:36 2017 -0700

• Resolving merge conflict
  • src/hg/lib/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtlCluster.html - lines changed 5, context: html, text, full: html, text

7c2d98b2096ecfe0c2a45c4a8b81a0fd41788879 Wed Jul 5 14:45:11 2017 -0700

• Cleanup before merge. refs #15646
  • src/hg/hgGtexTrackSettings/hgGtexTrackSettings.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 9, context: html, text, full: html, text
  • src/hg/hgTracks/gtexEqtlTracks.c - lines changed 26, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hgc/gtexEqtlClusterClick.c - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 19, context: html, text, full: html, text

eae24c27fd543e049969915b3bb690980e15b7d0 Wed Jul 5 14:48:11 2017 -0700

• Cleanup before merge. refs #15646
  • src/hg/inc/gtexEqtlCluster.h - lines changed 87, context: html, text, full: html, text

108d2fdf0aa57ebca7e2a62a028ce2c30cbe8049 Wed Jul 5 14:51:47 2017 -0700

• Cleanup before merge. refs #15646
  • src/hg/lib/gtexEqtlCluster.as - lines changed 14, context: html, text, full: html, text
  • src/hg/lib/gtexEqtlCluster.sql - lines changed 22, context: html, text, full: html, text

c025d190ec42127ad2d702b0ea47a1216566e85a Thu Jul 6 07:11:05 2017 -0700

• Fix dupe.
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 6, context: html, text, full: html, text

5408748cccb1dd36573de163b9eed0b4a72cd59a Thu Jul 6 07:17:44 2017 -0700

• Fix dupe.
  • src/hg/makeDb/trackDb/human/hg19/gtexEqtl.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 7, context: html, text, full: html, text

0301e7107474990ca5b3328ad5f622b018fb481c Thu Jul 6 13:14:00 2017 -0700

• Split label into left (gene) and right (tissues). refs #15646
  • src/hg/hgTracks/gtexEqtlClusterTrack.c - lines changed 44, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.h - lines changed 5, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 1, context: html, text, full: html, text

b1d7302e9f2a72f5bda78e15a02881706348152a Thu Jul 6 13:16:20 2017 -0700

• Merge branch 'eqtl-7-label'