File Changes for hiram

v358_preview2 to v358_base (2017-11-13 to 2017-11-27) v358

• src/hg/hgCustom/hgCustom.c
  • lines changed 16, context: html, text, full: html, text
    aecff87074bb35effb6ee1620132f69466807409 Tue Nov 14 11:18:57 2017 -0800
    change the variable name warn to warnMsg to avoid clash with same name function no redmine
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    cedef52b772e1cca44c8d8729289e50975506313 Mon Nov 27 10:06:16 2017 -0800
    New version number v358
• src/hg/lib/customFactory.c
  • lines changed 3, context: html, text, full: html, text
    7783dc22842c5459e44bc3c861800a8e7588aa77 Tue Nov 14 11:15:10 2017 -0800
    turning on limit of 50 million lines for a bed file input to a custom track to eliminate the gigantic incoming files no redmine
• src/hg/makeDb/doc/colAng1/initialBuild.txt
  • lines changed 3, context: html, text, full: html, text
    ea289ea2ec73ce6da8c158fdb279e0f4b9881f96 Fri Nov 17 10:03:17 2017 -0800
    adding blatServers refs #18958 #17545 #18927
• src/hg/makeDb/doc/hg19.txt
  • lines changed 88, context: html, text, full: html, text
    ebb367f7a4871a28b79b667f7c6eafbe892b647c Tue Nov 14 09:05:24 2017 -0800
    lastz chainNet to gorGor5 per user request refs #20482
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    3da2c082ae7d96244d1f2c0b78334623e45240a2 Tue Nov 14 14:27:59 2017 -0800
    note featureBits for gorGor5 chainRBestHg19 refs #20482
• src/hg/makeDb/doc/macNem1/initialBuild.txt
  • lines changed 3, context: html, text, full: html, text
    ea289ea2ec73ce6da8c158fdb279e0f4b9881f96 Fri Nov 17 10:03:17 2017 -0800
    adding blatServers refs #18958 #17545 #18927
• src/hg/makeDb/doc/rhiBie1/initialBuild.txt
  • lines changed 3, context: html, text, full: html, text
    ea289ea2ec73ce6da8c158fdb279e0f4b9881f96 Fri Nov 17 10:03:17 2017 -0800
    adding blatServers refs #18958 #17545 #18927
• src/hg/makeDb/hgLoadBed/hgLoadBed.c
  • lines changed 8, context: html, text, full: html, text
    52f4ca22edbec229dbac490a4fc6123044dad754 Tue Nov 14 11:06:20 2017 -0800
    adding lineLimit option to error out when files are too large no redmine
• src/hg/makeDb/trackDb/xenTro/xenTro9/cons11way.html
  • lines changed 43, context: html, text, full: html, text
    cfb24cb7ed14b50c6a6ff273be7929ff345716d6 Tue Nov 14 15:29:40 2017 -0800
    fixup 11-way description refs #19151
• src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.11way.ra
  • lines changed 1, context: html, text, full: html, text
    2bdca3d1d4f826e05bb597abee9508d4c50c69d0 Tue Nov 14 15:31:59 2017 -0800
    correct list of species in sGroup refs #19151
  • lines changed 1, context: html, text, full: html, text
    5023731f88ef52ef71aa8d37debc639d670e8a86 Tue Nov 14 15:33:35 2017 -0800
    correct shortLabel is Conservation refs #19151
• src/hg/makeDb/trackDb/xenTro/xenTro9/trackDb.ra
  • lines changed 2, context: html, text, full: html, text
    eef67ffcd89a88116d32c3548a99858104743f83 Tue Nov 14 11:01:34 2017 -0800
    turn on NCBI RefSeq for evaluation refs #19151
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    626a6375905120ccf7e821f9927561d47a8a0bb9 Tue Nov 14 11:04:11 2017 -0800
    NCBI RefSeq on for only alpha make refs #19151
• src/hg/mouseStuff/chainToPsl/tests/makefile
  • lines changed 2, context: html, text, full: html, text
    88d645ebb17441000185bc5303ab1e332fea4bd7 Wed Nov 15 10:00:35 2017 -0800
    avoid gzip waiting for confirmation to overwrite refs #20479
• src/inc/srcVersion.h
  • lines changed 3, context: html, text, full: html, text
    b9be85ef317a960033bc2cbaadf5a9b931c20061 Tue Nov 14 12:52:17 2017 -0800
    trying out a srcVersion print in optionsInit() no redmine
  • lines changed 1, context: html, text, full: html, text
    cedef52b772e1cca44c8d8729289e50975506313 Mon Nov 27 10:06:16 2017 -0800
    New version number v358
• src/lib/options.c
  • lines changed 3, context: html, text, full: html, text
    b9be85ef317a960033bc2cbaadf5a9b931c20061 Tue Nov 14 12:52:17 2017 -0800
    trying out a srcVersion print in optionsInit() no redmine
• src/utils/bedClip/tests/makefile
  • lines changed 6, context: html, text, full: html, text
    1c0a252fc496333382df6b391646afca45b11d2f Thu Nov 16 14:08:47 2017 -0800
    eliminate confusion from new source version printout no redmine
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    0e1c30edecf67391e0260ddee07c28b565bd5f44 Mon Nov 27 10:05:32 2017 -0800
    v358 final build refs #20479
• src/utils/qa/weeklybld/updateCgiVersion.csh
  • lines changed 3, context: html, text, full: html, text
    f1d847f8a1ccfcb1c1f7267e5f87e819bdfa4a2a Tue Nov 14 13:00:04 2017 -0800
    also edit the srcVersion.h file with the versionInfo.h no redmine
• src/utils/userApps/mkREADME.sh
  • lines changed 9, context: html, text, full: html, text
    6fdd5908880d6a2fb2e4f7235679981888d8055b Tue Nov 14 13:37:59 2017 -0800
    avoid verbose argument on a few commands no redmine
  • lines changed 1, context: html, text, full: html, text
    50f1ff191f99e85d8f8ef21785fd27d142edec67 Tue Nov 14 14:17:46 2017 -0800
    a couple more programs that can not manage verbose argument no redmine
  • lines changed 1, context: html, text, full: html, text
    8621d381fa72623be321c96e4ac19e652a01147a Tue Nov 14 14:37:14 2017 -0800
    eliminate one ERROR: message no redmine