Commits for braney

v371_preview2 to v371_base (2018-09-03 to 2018-09-10) v371

0cb4c703bd9ff662207617fa0980092ac670aece Tue Sep 4 16:52:03 2018 -0700

• add wildcard filtering and fix-up single selection in filterValue settings refs #20227
  • src/hg/hgTracks/bigBedTrack.c - lines changed 17, context: html, text, full: html, text
  • src/hg/inc/bigBedFilter.h - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 27, context: html, text, full: html, text

9cb05998ea1d3b652437eba8a9618f0279f2bf24 Thu Sep 6 08:08:53 2018 -0700

• Gencode v29 knownGene #21644
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text

739867367229d55193ca5bf94f1c271478187383 Thu Sep 6 11:17:42 2018 -0700

• only do "all or one or more" on bigBed filterBy's and fix bug #20227
  • src/hg/lib/hui.c - lines changed 6, context: html, text, full: html, text

4bc6084f77a95eaacd21697240e0cf8762cec9cd Thu Sep 6 15:19:10 2018 -0700

• if db is not in URL, but genome is, use it for db #22012
  • src/hg/lib/web.c - lines changed 3, context: html, text, full: html, text

bab1930bc04bfd2abb34eda5b78075528d06edb4 Thu Sep 6 18:44:39 2018 -0700

• scrape wikipedia for genes #21644
  • src/hg/makeDb/doc/wikipediaScrape.txt - lines changed 10, context: html, text, full: html, text

4fa28cb0f577addf1cf9dcee723737e009afc1fd Fri Sep 7 14:23:11 2018 -0700

• add support for bigGenePred version of v29 Gencode #21644
  • src/hg/hgTracks/simpleTracks.c - lines changed 22, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/automation/doHgNearBlastp.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/genePredToBigGenePred/makeBigKnown - lines changed 3, context: html, text, full: html, text

357f139a70677a49e14a513f1ebee31610a403a7 Sun Sep 9 14:11:16 2018 -0700

• remove some code that wasn't doing anything because the items were already filtered #22023
  • src/hg/hgTracks/interactTrack.c - lines changed 7, context: html, text, full: html, text

d9d90603665c77c2ccdb3e1972a3dbea14c3475d Sun Sep 9 14:14:22 2018 -0700

• add some copyright messages to the tops of some files #22023
  • src/hg/inc/bigBedFilter.h - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/bigBedLabel.c - lines changed 4, context: html, text, full: html, text

ba1364f991c175a718f2a2c853d69152ec414acb Sun Sep 9 14:15:58 2018 -0700

• remove check that was failing on recent versions of RNAfold because the sequence is now in lower case #21644
  • src/hg/rnaStructure/hgLoadRnaFold/hgLoadRnaFold.c - lines changed 2, context: html, text, full: html, text

7a760710d82d49d1322ca433317512492fe48732 Mon Sep 10 02:55:01 2018 -0700

• make sure to set the default for text matching to wildcard #20227
  • src/hg/lib/hui.c - lines changed 1, context: html, text, full: html, text