Commits for hiram

v380_preview to v380_preview2 (2019-03-25 to 2019-04-01) v380

edc3b70da9383b7c7aa62fa66341ec7dc89e60ea Mon Mar 25 13:51:46 2019 -0700

• correct html page for the chainNet composites refs #22687
  • src/hg/makeDb/trackDb/chicken/galGal6/chainNet.html - lines changed 178, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal6/chainNetBirds.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal6/chainNetFish.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/chicken/galGal6/chainNetvertebrate.ra - lines changed 2, context: html, text, full: html, text

136481ed08005073b11b1b1f326ee7c85f4d2f58 Tue Mar 26 13:14:56 2019 -0700

• adding the botDelay functions refs #18869
  • src/hg/hubApi/apiUtils.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hubApi/dataApi.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 52, context: html, text, full: html, text

ccc9f64c81d44f2e734c61cc73149f60e7768b10 Tue Mar 26 19:16:36 2019 -0700

• required new library on Mac OSX refs #23070
  • src/inc/common.mk - lines changed 10, context: html, text, full: html, text

e1ace7526b7d16654717065227a2d1e6f3fe4654 Tue Mar 26 20:12:20 2019 -0700

• adding testing for hubApi refs #18869
  • src/hg/hubApi/getData.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/hubApi/list.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hubApi/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/hubApi/tests/expected/test0.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test1.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test10.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test11.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test12.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test13.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test14.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test15.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test16.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test17.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test18.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test19.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test2.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test20.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test3.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test4.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test5.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test6.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test7.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test8.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test9.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/jsonConsumer.pl - lines changed 191, context: html, text, full: html, text
  • src/hg/hubApi/tests/makefile - lines changed 123, context: html, text, full: html, text

99053ad4db25a38b8e290235a2e15b325e2e568a Tue Mar 26 20:14:00 2019 -0700

• test result no longer needed refs #18869
  • src/hg/hubApi/tests/expected.json.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

0edb8745a4b8d2f2e5558d592515fde615786a90 Tue Mar 26 20:20:11 2019 -0700

• need to make the testOutput directory to get started refs #18869
  • src/hg/hubApi/tests/makefile - lines changed 25, context: html, text, full: html, text

dd184bbf868ed714e3d536d5eacbd19645bb1f63 Wed Mar 27 09:39:33 2019 -0700

• output the track name and sqlTable name if different refs #18869
  • src/hg/hubApi/getData.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hubApi/tests/expected/test10.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test18.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test19.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test21.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test3.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test4.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test5.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test8.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test9.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 9, context: html, text, full: html, text

3bbad1670f2e44ca41d06c657b8f8636abfce4fb Wed Mar 27 14:47:11 2019 -0700

• provide list chrom function for hubs refs #18869
  • src/hg/hubApi/apiUtils.c - lines changed 53, context: html, text, full: html, text
  • src/hg/hubApi/dataApi.h - lines changed 9, context: html, text, full: html, text
  • src/hg/hubApi/getData.c - lines changed 42, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 31, context: html, text, full: html, text
  • src/hg/hubApi/list.c - lines changed 149, context: html, text, full: html, text

51db0a5d14bdc077c2092dc632b57c17d09d0404 Wed Mar 27 14:49:28 2019 -0700

• provide list chrom function for hubs refs #18869
  • src/hg/hubApi/tests/expected/test2.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test22.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test23.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test3.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test4.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test5.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 19, context: html, text, full: html, text

fc452e9c75747702a8a312d7943b3607f8328158 Wed Mar 27 14:58:11 2019 -0700

• adding /list/chromosomes function for hubs refs #18869
  • src/hg/hubApi/tests/jsonConsumer.pl - lines changed 17, context: html, text, full: html, text

80288e7ecadb017ea194cfcbfeb022cee8b17e7f Fri Mar 29 08:19:30 2019 -0700

• beginning JSON API documentation refs #18869
  • src/hg/htdocs/goldenPath/help/api.html - lines changed 74, context: html, text, full: html, text

ef83c5a7e3bb6168a91478e1b7be4318d7578a1a Fri Mar 29 11:11:39 2019 -0700

• adding example URLs refs #18869
  • src/hg/htdocs/goldenPath/help/api.html - lines changed 100, context: html, text, full: html, text

8d6e9ae8ab451313eabf7f6c87d9435eedf702ac Fri Mar 29 11:13:19 2019 -0700

• add chrom print out to track getData and fix up test harness to be more general refs #18869
  • src/hg/hubApi/getData.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hubApi/tests/jsonConsumer.pl - lines changed 96, context: html, text, full: html, text
  • src/hg/hubApi/tests/makefile - lines changed 1, context: html, text, full: html, text

88bfbff010507fe4327e1d3f51feb5c811d5b97f Fri Mar 29 11:14:04 2019 -0700

• now running test0 explicitly with argument refs #18869
  • src/hg/hubApi/tests/expected/test0.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)

9960cf0397087eb029ab212ff7d0b9fdcdc94c87 Fri Mar 29 15:11:56 2019 -0700

• now with a full set of examples refs #18869
  • src/hg/htdocs/goldenPath/help/api.html - lines changed 61, context: html, text, full: html, text

1bfad89c514f15aef219d6bfdcca6f9f754c3ac8 Fri Mar 29 15:13:56 2019 -0700

• now returning DNA sequence from assembly or track hub refs #18869
  • src/hg/hubApi/getData.c - lines changed 96, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 1, context: html, text, full: html, text

5bc5745e2cc4a0e729b2d97ccd24bc74390d1a7c Fri Mar 29 15:17:14 2019 -0700

• now testing DNA sequence return from assembly and track hubs refs #18869
  • src/hg/hubApi/tests/expected/test10.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test9.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/jsonConsumer.pl - lines changed 1, context: html, text, full: html, text
  • src/hg/hubApi/tests/makefile - lines changed 11, context: html, text, full: html, text

e4bdd0d12972eda9b31a90bba71236dc6a4491bc Fri Mar 29 15:49:48 2019 -0700

• adding test24 and test25 DNA sequence from assembly and track hub refs #18869
  • src/hg/hubApi/tests/expected/test24.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/expected/test25.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/hubApi/tests/makefile - lines changed 1, context: html, text, full: html, text

c53b91d7a2c0986df7872b2af76abb38af95035a Mon Apr 1 11:36:03 2019 -0700

• v380 preview2, refs #23203
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text