Commits for jcasper

v382_preview to v382_preview2 (2019-05-06 to 2019-05-13) v382

fe43cd3394528a515b867eb2e8f69d152bd4d178 Mon May 6 10:01:16 2019 -0700

• A few initial library additions for eventual Hi-C support, refs #18842
  • src/hg/lib/chromAlias.c - lines changed 25, context: html, text, full: html, text
  • src/hg/lib/chromAlias.h - lines changed 68, context: html, text, full: html, text
  • src/inc/htmlColor.h - lines changed 3, context: html, text, full: html, text
  • src/inc/obscure.h - lines changed 6, context: html, text, full: html, text
  • src/lib/htmlColor.c - lines changed 11, context: html, text, full: html, text
  • src/lib/obscure.c - lines changed 28, context: html, text, full: html, text

14dbb674fd1cc2300b157847a50dae414aa44e40 Mon May 6 10:08:20 2019 -0700

• Moved chromAlias.h from hg/inc to hg/lib, apparently git missed the memo, no ticket
  • src/hg/inc/chromAlias.h - lines changed 72, context: html, text, full: html, text

ddb71276f45d5967f0d2249478ef1a4ffe854163 Fri May 10 17:04:45 2019 -0700

• Fixing overflow bug with udcFileSize, no ticket
  • src/lib/udc.c - lines changed 1, context: html, text, full: html, text

b0e3641e5d6074c8deb5c89ba0333de5847f9cda Sun May 12 01:11:46 2019 -0700

• Installing updated hg.conf files from UCSC servers
  • confs/hgwdev.hg.conf - lines changed 2, context: html, text, full: html, text

ba72264e2cb13ed8ce40418bb42eafb2e88e7869 Sun May 12 21:26:43 2019 -0700

• Adding spectrum.js to hgTrackUi for color inputs, refs #18842
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text

f863c012ea39c498eaf4cff84f85f92fef210c5f Mon May 13 00:51:57 2019 -0700

• Initial commit of Hi-C display support via .hic files, refs #18842
  • src/hg/hgTracks/hgTracks.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hgTracks/hicTrack.c - lines changed 513, context: html, text, full: html, text
  • src/hg/hgTracks/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 4, context: html, text, full: html, text
  • src/hg/htdocs/style/HGStyle.css - lines changed 3, context: html, text, full: html, text
  • src/hg/inc/Cstraw.h - lines changed 26, context: html, text, full: html, text
  • src/hg/inc/hic.h - lines changed 22, context: html, text, full: html, text
  • src/hg/inc/hicUi.h - lines changed 72, context: html, text, full: html, text
  • src/hg/inc/trackDb.h - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hic.c - lines changed 57, context: html, text, full: html, text
  • src/hg/lib/hicUi.c - lines changed 265, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/lib/straw/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/lib/straw/straw.cpp - lines changed 994, context: html, text, full: html, text
  • src/hg/lib/straw/straw.h - lines changed 62, context: html, text, full: html, text
  • src/hg/lib/straw/udcWrapper.h - lines changed 194, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text