Commits for markd

v384_preview2 to v384_base (2019-06-24 to 2019-07-01) v384

f804309aff2c2d12b78fc09dc656376e69e75d2c Mon Jun 24 14:15:29 2019 -0700

• added test case for single block bed and make test file name less silly
  • src/hg/makeDb/doc/transMapTracks.txt - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/bedMergeAdjacent/makefile - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/bedMergeAdjacent/tests/expected.bed - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/bedMergeAdjacent/tests/input.bed - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/bedMergeAdjacent/tests/test-expected.bed - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/bedMergeAdjacent/tests/test-input.bed - lines changed 4, context: html, text, full: html, text

bac82874036ee294850fcfe64cc6cba209c3262d Tue Jun 25 09:41:44 2019 +0100

• added some conditionals and renamed a variable to make files more friendly to include in C++ code
  • src/inc/common.h - lines changed 2, context: html, text, full: html, text
  • src/inc/genomeRangeTree.h - lines changed 1, context: html, text, full: html, text
  • src/lib/genomeRangeTree.c - lines changed 1, context: html, text, full: html, text

22f0c874d90f86f1bfa4014ee29f9c0ee0bff517 Tue Jun 25 23:17:29 2019 -0700

• load transMap V5
  • src/hg/makeDb/doc/transMapTracks.txt - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/schema/all.joiner - lines changed 298, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.transMap.ra - lines changed 123, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMap.html - lines changed 114, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapAlnMRna.html - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapAlnRefSeq.html - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapAlnSplicedEst.html - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapAlnUcscGenes.html - lines changed 133, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEnsembl.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEnsemblV4.html - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEst.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapEstV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRefSeq.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRefSeqV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRna.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapRnaV4.html - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/transMapV4.html - lines changed 25, context: html, text, full: html, text

4571e8f87bb083f81f671b81d7d3aef65334f2e1 Fri Jun 28 11:58:35 2019 -0700

• made transmap download documents neutral to version
  • src/hg/makeDb/trackDb/transMapTailer.html - lines changed 5, context: html, text, full: html, text