Commits for ccpowell

v385_preview2 to v385_base (2019-07-15 to 2019-07-22) v385

a7ad142a0ac39c7c2e171e110e879c1cfd07bb1d Tue Jul 16 09:36:29 2019 -0700

• Turning on GenBank updates for new assembly #21223
  • src/hg/makeDb/genbank/etc/hgwbeta.dbs - lines changed 2, context: html, text, full: html, text

32ffc191ad2340e01474998c9d51f0e141d42e7b Tue Jul 16 11:45:11 2019 -0700

• Adding MariaDB to explain we use a MariaDB database in place of MySQL, refs #23597
  • src/hg/htdocs/goldenPath/help/gbic.html - lines changed 11, context: html, text, full: html, text
  • src/hg/htdocs/goldenPath/help/mirror.html - lines changed 7, context: html, text, full: html, text

030a9178e44241790faf9299cbc33191d0d55860 Tue Jul 16 13:28:24 2019 -0700

• Swapping MySQL to MariaDB in documentation, refs #23597
  • src/hg/htdocs/goldenPath/help/trackDb/trackDbLibrary.shtml - lines changed 11, context: html, text, full: html, text

920182af2776a6d9069df29d2ea81b3aadf84a40 Tue Jul 16 13:38:54 2019 -0700

• Switching MySQL mentions with MariaDB, refs #23579
  • src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text

2f106a9cd51707e6772b96064b2fcfc30bca95b0 Thu Jul 18 14:54:51 2019 -0700

• Switching YP with NP mention in all organism execept human, refs #23818
  • src/hg/makeDb/trackDb/human/refSeqCompositeHuman.html - lines changed 278, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/refSeqCompositeHuman.ra - lines changed 200, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 3, context: html, text, full: html, text

eaee56008efdda915686796920f460143ecaf4fb Thu Jul 18 15:27:20 2019 -0700

• Editing include statment to point at .html file not .ra file, refs #23818
  • src/hg/makeDb/trackDb/human/refSeqCompositeHuman.ra - lines changed 1, context: html, text, full: html, text

d4ecfb99f3d657c23434e078924e18010ebfd5da Thu Jul 18 15:48:58 2019 -0700

• Remvoing refSeqCompositeHuman files because refSeqComposite is globally inherited, refs #23818
  • src/hg/makeDb/trackDb/human/refSeqCompositeHuman.html - lines changed 278, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/refSeqCompositeHuman.ra - lines changed 200, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 3, context: html, text, full: html, text

ab1f76a9f9584135781f3897ff94a5522ca7e3c2 Thu Jul 18 15:52:33 2019 -0700

• Rewriting refSeqCurated description to include YP_* , refs #23818
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 1, context: html, text, full: html, text

48d3221e1e9896b4d6b3b2aa969dc4906295699b Fri Jul 19 11:40:28 2019 -0700

• Updating description to mention YP & NP are mitochondrial, refs #23818
  • src/hg/makeDb/trackDb/refSeqComposite.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/refSeqComposite.ra - lines changed 3, context: html, text, full: html, text