Commits for hiram

v385_preview to v385_preview2 (2019-07-08 to 2019-07-15) v385

b982d5db645880484aa615b93bafa4c650abed31 Mon Jul 8 15:14:19 2019 -0700

• correctly idenfity chrom and chromStart columns in any specified database table refs #23589
  • src/hg/hubApi/apiUtils.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hubApi/dataApi.h - lines changed 3, context: html, text, full: html, text
  • src/hg/hubApi/getData.c - lines changed 17, context: html, text, full: html, text
  • src/hg/hubApi/hubApi.c - lines changed 3, context: html, text, full: html, text
  • src/hg/hubApi/tests/expected/altGraphX.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/barChart.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/chain.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/ctgPos.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/expRatio.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/factorSource.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/interact.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/netAlign.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/peptideMapping.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/pgSnp.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test39.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test40.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/test8.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/wig01.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/wig02.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/wig03.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/wig04.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)
  • src/hg/hubApi/tests/expected/wig13.gz - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

53c0ef5df5bee7978a6d37a401190471e097c689 Mon Jul 8 15:20:16 2019 -0700

• lastz chainNet to regenRn0 and rheMac10 refs #23771 #21579
  • src/hg/makeDb/doc/mm10.txt - lines changed 125, context: html, text, full: html, text

3da24c002ed1f1bba8eab282fccaf194ac80b1fe Tue Jul 9 09:28:39 2019 -0700

• lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771
  • src/hg/makeDb/doc/hg38/lastzRuns.txt - lines changed 146, context: html, text, full: html, text

9e3fea3eabab398560715780a111a3fd2c6eac75 Tue Jul 9 10:04:59 2019 -0700

• lastz chainNet to regenRn0 and rheMac10 refs #21579 #23771
  • src/hg/makeDb/trackDb/trackDb.chainNet.primates.ra - lines changed 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text

ed89f043c1f6fd43c8839f0f2f0a3bc5a9698178 Tue Jul 9 10:24:56 2019 -0700

• adding rheMac10 to the composite chainNet refs #23771
  • src/hg/makeDb/trackDb/human/chainNetPrimate.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetRheMac10.ra - lines changed 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/chainNetRheMac8.ra - lines changed 3, context: html, text, full: html, text

bc41dae7c763f008e8773bcbe1a534d7d54808ce Wed Jul 10 17:07:11 2019 -0700

• add error 206 Partial Content with maxItems limit reached refs #23589
  • src/hg/hubApi/apiUtils.c - lines changed 6, context: html, text, full: html, text
  • src/hg/hubApi/dataApi.h - lines changed 2, context: html, text, full: html, text

c276f82d0378828b34191dd53e2d8127a1486d5d Mon Jul 15 10:27:36 2019 -0700

• v385 preview2, refs #23695
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text